Neogale vison (American mink): 122903005
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Entry
122903005 CDS
T08764
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
nvs
Neogale vison (American mink)
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nvs03036
]
122903005 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
nvs03400
]
122903005 (SMCHD1)
Chromosome and associated proteins [BR:
nvs03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122903005 (SMCHD1)
DNA repair and recombination proteins [BR:
nvs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122903005 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122903005
NCBI-ProteinID:
XP_044099265
LinkDB
All DBs
Position
3:175637893..175787578
Genome browser
AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRRDKESELGDRVLQVEERSDYARFRVSVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDNFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKC
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLSPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGSDIQPVFEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFLGAPNLPVYVVDCSSSGTSILTGAAIQVQNIKKDQTLKAKIEIPSCKDVVP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTIQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWP
DLKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GSIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLHLTITDDYNNHTGIDLVGTVVATIKGSNEEDMDTPLFIGKVRTLEF
PFVKGSAEITNLVLAENSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNITVYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGRLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNSVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPTKVEMTDCP
VPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccttcggtggggaccggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgataaagagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgtctctgtgtgtcagaca
cttggcatttcacccgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtt
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgcctttt
gctcttgcagaattaattgacaattcattgtctgctacttctagaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttatca
aaatttacgaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttattttagaggaaaaggaaaaagataactttactgctgtggtt
atcacaggagtacaaccagaacacatacagtacttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaacgaaaaatgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccccgatgatcca
tgctttccgtcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggccgatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggctttcaccaatt
gaatgttataatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacacgctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagaatttgctttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggctacatactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctctatggtgatcatgatggagaagtatatgcc
acgggaggagaggttcagattgcaatggaacctcaggcactgtatgatgaaataaaaact
gtgccaattgcaaagcttgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgagattagacctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggggaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactgccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggaatttcaggatgaatttggtcatactagtcaactaggaagtgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccaaaggaccgaattgt
gtgattcgaggtgttacagctaagggccctgtaaactcttgtcagggcaagaattttaat
ttgaaggttattctgccgggcttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccgtttcaggtagaagttttggatgaatcagacaatataacaacacag
ccaaaattgattgttcattgtaagtttttaggtgctccaaaccttccagtctacgtcgta
gattgcagcagttctggaaccagtattttaacaggagctgcaattcaagtacagaacatt
aaaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggtaccc
gtggagaagactattaagttgcttcctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaattcatata
acatcaactttagcagataaaattaaagttaattggactcctgagattaacaaggaacac
ttgctacagggtctccttcctgatgtacaagtaccaacatctgtgaaagatatgcggtat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttaaaaggaggaaaaacaatacagatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagata
caggcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacctggcgtgaattttctgac
tttattcgagtgcaactaatttctggaccaccagcaaagcttctccttgtagactggcca
gacttaaaggagtccattccagtgattaatggaagagaactacagaatcctctcattgtt
caactttgtgaccagtgggataatccagcacctgtatcacaggttaaaataagtctcatg
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgctcctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagaaggacctataattaagttaatgattcttcca
gatcctgaaaaacctattcgtctcaatgttaaatatgacaaggatgcttcctttttagca
gggagtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatactgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctgcctaatcaacctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctccgttgccagtaggaccttggtcaaagatttacatcttactattacggat
gactataacaatcatactggaattgatttggttggcactgtagtagctaccattaaaggt
tctaatgaggaagatatggatacaccactgtttattgggaaagtgagaacactcgaattt
ccctttgtgaaaggttcagctgaaattacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattatatttgagccccagctaccagctctatcaagaaca
ttagaaccatatatcctaccgtttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattacagtatatagaagttta
tttgaagccagcaaccagcttcttgatgaaatgaagtgccaagttgaagaagcaaaatta
aaagaggctcagttgcaaaatgaactaaaaacacataatattgacattcctacaacacaa
cagatgccacacattgaagcactgttgaaaagaaagttatcagaacaggaagaactgagg
aaaaaaccgagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgacatggactgtgttgtcactctgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaacggaagattgtattttaaaccc
attggagatccagtctttgctcgagatttgttaacatttccagataatgtagagcattgt
gaaacagtgtttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgttaaaattacacactgtcctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacagtgcctggtcttaggg
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaaattgaacagtgtgata
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgaacagaaactaggtatgactccc
acacgtaagtgtaatgactcattgcgccatccaacaaaggttgaaatgacagattgtcca
gttcctcctaaaagaatgagaagagaagcttccagacaaaataggattataaccaaatca
gatgtatga
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