Neogale vison (American mink): 122917537
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Entry
122917537 CDS
T08764
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
nvs
Neogale vison (American mink)
Pathway
nvs04064
NF-kappa B signaling pathway
nvs04622
RIG-I-like receptor signaling pathway
nvs04623
Cytosolic DNA-sensing pathway
nvs05160
Hepatitis C
nvs05161
Hepatitis B
nvs05162
Measles
nvs05164
Influenza A
nvs05168
Herpes simplex virus 1 infection
nvs05169
Epstein-Barr virus infection
nvs05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
nvs00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
122917537 (DDX58)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122917537 (DDX58)
04623 Cytosolic DNA-sensing pathway
122917537 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
122917537 (DDX58)
05160 Hepatitis C
122917537 (DDX58)
05171 Coronavirus disease - COVID-19
122917537 (DDX58)
05164 Influenza A
122917537 (DDX58)
05162 Measles
122917537 (DDX58)
05168 Herpes simplex virus 1 infection
122917537 (DDX58)
05169 Epstein-Barr virus infection
122917537 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nvs04054
]
122917537 (DDX58)
Enzymes [BR:
nvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122917537 (DDX58)
Pattern recognition receptors [BR:
nvs04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
122917537 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_22
CCDC85
CBP110
AAA_25
Motif
Other DBs
NCBI-GeneID:
122917537
NCBI-ProteinID:
XP_044121477
LinkDB
All DBs
Position
9:38337003..38375173
Genome browser
AA seq
929 aa
AA seq
DB search
MSAEDRRNLHAFRDYVVKTLDPTYILSHMAPWFKDDEVQHIQAEKNNKGTMEAASLFLKF
LLERQEEGWFRGFLDALGHAGYSGLYEAIETWDFQKIESLEEYRSLLKRLQPEFKTTVNP
KDILPEMSQCLISQECEEIIQVCSNKGLMAGAEKMVECLLRSDKENWPKTLKLALEMEES
KFSELWIVDKDAKNVEPKVLEDDEMETSDIQIFYKEEPECQNLSQNSSPPSAASPTCMPL
KPRNYQLELTLPAKEGKNTLICAPTGCGKTFVSLLICEHHLKKFPQEQKGKVVFFAIHLP
LYEQQKSIFSDYFEKLGYKVAGVSGVTAETVSVEQIVENNDIIILTPQILVNSLRNGTIP
SLSVFTLMIFDECHNTGKNHPYNMIMFNYIDQKLGGSSDPLPQVIGLTASVGTGDAKNTN
EAMEYICKLCASLDTAVIATVKDNLEELEEVAYKPQKFFRKVESRTTDRFKCIISQLMRE
TESLAKSIFDELGTVTLENVSQIQNRSFGTQKYEQWIVSVQKACMVVQLPDKDEESRICK
ALYLYTSHLRKYNDALMINEHARMKDALDYLKDFFAEVRSAGFDETEQDLTRRFEEKLKE
LESVSMDLSNENPKLKDLSFILQEEYHLNPESRTILFVKTRALVDALKKWIEENSELSFL
NPGILTGRGKTNQNTGMTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAECNLVILYE
YVGNVIRMIQTRGRGRAKGSKCFLLTSNADVIEKEKINIYKENMMNESILRLQTWNEAVF
KEKILQIQIQEKFIRDSQAKVEPVPDKENKKLLCRKCKGFACYTADIRVVEDCHYAVVGD
AFRKCYVTKLHPKPKTYGHFEKKSKIFCARENCCHDWGIHVKYKTFEIPVIKIESFVVED
IATGAQKLYAKWRDFPIEKIPFDATEMSK
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaggatcggcggaatctgcacgccttccgggactatgtcgtgaagactctg
gaccctacctatatcctaagccacatggctccctggtttaaggacgatgaggtgcagcat
attcaggctgagaaaaacaataagggcacgatggaggctgcctcactttttcttaagttt
ctgttggagcgccaggaagaaggctggttccgtggctttttggacgcccttggtcatgca
ggttattctggactttatgaagccattgaaacttgggatttccaaaaaattgaaagtcta
gaggagtacagatcgcttctaaagcgtttacaaccagaatttaaaaccacagttaatcca
aaagatatccttcctgaaatgtcccaatgtttaattagtcaggagtgtgaagaaattata
caggtgtgttccaacaaggggctgatggcaggtgcagagaaaatggttgaatgccttctt
agatcagataaggaaaactggcccaaaactttgaaacttgctttggagatggaagagagc
aagttcagtgaactgtggattgttgacaaagatgcaaaaaatgttgaaccgaaagttctt
gaggatgatgaaatggaaacttctgacatacagattttctataaggaagaaccagaatgc
cagaatcttagtcagaactcatctccaccctcagcagcctctcctacctgcatgcctctg
aagccaagaaattaccaactagagctcactttgcctgctaaggaaggaaaaaacacatta
atatgtgctcctactggatgtggaaaaacctttgtttcccttcttatatgtgaacatcat
cttaaaaaatttccacaagaacaaaaggggaaagttgtcttttttgctattcatctccca
ctatatgaacagcagaaatccatattctctgattattttgaaaaacttgggtataaagtt
gcaggtgtttctggagtaacagctgagactgtctctgtggaacagattgttgagaacaat
gacatcatcattttaactccacagattcttgtgaatagccttagaaatgggaccattcca
tcactctctgtctttactttgatgatatttgatgaatgtcacaacaccggtaaaaaccat
ccttacaatatgatcatgtttaattatatagatcagaaacttggaggatcttcagaccca
ctgcctcaggtcattgggctgactgcctcggttggcactggggatgccaaaaacacaaac
gaagccatggaatatatctgcaaactgtgtgcctctcttgacacggcagtgatagcaaca
gtcaaagacaacttggaggaactggaagaagttgcttataagccccagaagtttttcagg
aaagtagaatcccggactactgacagatttaaatgcatcatatctcagctgatgagggag
acagagagtctggcaaagagtatctttgatgaactcggtaccgtaactcttgaaaatgta
tctcaaattcaaaataggagttttggaacacagaaatatgagcagtggatcgtttccgtt
cagaaagcgtgtatggtggttcagttgcctgacaaagatgaagagagcaggatttgtaaa
gccctgtatttgtacacttcccacttgcggaaatataacgatgccctcatgatcaatgag
catgcacggatgaaagatgctctggattacttaaaagacttcttcgctgaggtccgaagt
gcaggatttgatgagactgagcaggacctcactcgtagattcgaagaaaaattgaaggaa
ctggaaagtgtttccatggatctcagcaacgagaaccctaaactaaaagatctctccttc
atcttgcaagaagagtaccacttaaacccagagagtagaaccatcctctttgtgaaaacc
agagcacttgtggatgctttgaagaagtggattgaagaaaattctgagctcagctttcta
aaccctggcatattgactggacgtggcaaaacaaatcagaacacaggaatgacgctccca
gcacagaagtgtgcattggatgcatttagaactgatggagataaaaagattctgattgcc
acttcagttgctgatgaaggcatcgacattgctgagtgtaatttggtcatcttgtatgag
tatgtgggcaatgtcatcagaatgattcaaaccagaggcagaggaagagcaaaagggagc
aagtgcttccttctgaccagcaatgctgatgtaatcgaaaaagaaaaaataaacatatac
aaggaaaacatgatgaatgaatccattttaaggcttcagacgtggaatgaagcagtattt
aaagaaaagattctccagatacagatacaagaaaaattcatcagggatagtcaagcaaaa
gtagaacctgtacccgataaggagaataaaaaactgctttgcagaaagtgtaagggcttt
gcgtgttacacggctgacatcagagtggtagaggactgccattacgctgtggttggagat
gctttcaggaagtgctatgtgaccaaattacaccccaaaccaaagacctatgggcatttt
gagaagaaatcaaagatcttctgtgccagagagaactgctgccatgactggggaatccat
gtgaagtataagacatttgagattccagttataaaaatagaaagctttgtggtggaggat
attgcaactggagctcagaagctatatgcaaagtggagggattttcctattgagaagata
ccctttgatgctacagaaatgtccaaatga
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