Nocardia vulneris: V7968_39875
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Entry
V7968_39875 CDS
T10816
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nvu Nocardia vulneris
Pathway
nvu03030
DNA replication
nvu03410
Base excision repair
nvu03420
Nucleotide excision repair
nvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V7968_39875 (ligA)
03410 Base excision repair
V7968_39875 (ligA)
03420 Nucleotide excision repair
V7968_39875 (ligA)
03430 Mismatch repair
V7968_39875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nvu03032
]
V7968_39875 (ligA)
03400 DNA repair and recombination proteins [BR:
nvu03400
]
V7968_39875 (ligA)
Enzymes [BR:
nvu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V7968_39875 (ligA)
DNA replication proteins [BR:
nvu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V7968_39875 (ligA)
DNA repair and recombination proteins [BR:
nvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V7968_39875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V7968_39875 (ligA)
MMR (mismatch excision repair)
DNA ligase
V7968_39875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V7968_39875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
WWW18975
LinkDB
All DBs
Position
complement(8825393..8827522)
Genome browser
AA seq
709 aa
AA seq
DB search
MSDSSAVDNDTNAPAPATAEQRVQWQQLADEVREHQFRYYVRDSPIITDGEFDMLLRRLQ
AMEEQHPDLLTPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFDFDELRTWASRVEAETG
PDLHYLCEVKIDGVALNLVYENGRLVRGATRGDGRTGEDVTLNARTIEDIPGELTPSAEF
PIPALLEVRGEAYMRLEDFETLNAAIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRM
ICHGFGRIEGYAPASQHEAYRALAAWGLPVSEHTKLVQGIDAVIERVAYWGEHRHDIEHE
IDGQVIKIDEMALQRRLGSTSRAPRWAIAYKYPPEEATTKLLNIEVNVGRTGRVTPFAVM
EPVSIAGSTVSMATLHNASEVERKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAERAFV
MPTHCPACGTELAPQKEGDADIRCPNQQFCPAQLRERVFHVAGRGAFDIESLGYEAANDL
LKSGVITDEGDLFDLDESRLLATTLFANKDGGLSANGRRLLDNLDVAKSRPLWRVLVALS
IRHVGPTAARVLAREFGSLDRIQDASAEELAAADGVGPTIAAAVAEWFTVEWHRAIVGKW
RAAGVRMADERDESIERTLEGLSIVVTGSLDGFSRDGAKEAILVRGGKAAGSVSKKTAFV
VIGDAPGSKAAKAAELGVPILDEDGFRLLLEAGPDAVTPQSETGSEPED
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgacagcagtgcggtggacaacgacacgaacgcacccgccccggcgacggccgag
caacgcgtgcagtggcagcagctggcggacgaggtgcgcgagcatcagttccgctactac
gtgcgcgactcgccgatcatcaccgacggcgagttcgacatgctgctgcgccgcctgcag
gccatggaggagcagcaccccgatctgctcaccccggattcgccgacccagctggtcggc
ggcgggttcgcgaccgacttcaccgcggtcgaccacctggagcggatgctgtcgctggac
aacgtgttcgacttcgacgagctgcgcacctgggcgagccgcgtcgaggccgagaccggg
cccgatctgcactatctgtgcgaggtgaagatcgacggcgtcgcactgaacctggtgtac
gagaacgggcggctggtgcgcggggcgacccgcggtgacgggcgcacgggcgaggacgtc
acgctcaacgcgcgcaccatcgaggacatcccgggcgagctgacgcccagcgccgagttc
ccgatcccggccttgctcgaggtgcgcggcgaggcgtacatgcggctcgaggacttcgag
acgctcaacgcggccatcgtggccgagggcaaaccgccgtacgcgaatccgcgcaacacc
gcggccggctcgctgcggcagaaggacccggcggtcaccgcacgccgccggctgcggatg
atctgccacggcttcggccgcatcgagggctatgctccggcctcgcagcacgaggcctat
cgggcgctggcggcctggggcctgccggtgtccgagcacaccaagctggtgcagggcatc
gacgccgtcatcgaacgcgtcgcgtactggggcgagcatcgccacgatatcgagcacgag
atcgacgggcaggtcatcaagatcgacgagatggccctgcagcgcaggctcgggtccacc
tcgcgcgcgccacgctgggcgatcgcctacaagtatccgccggaggaggcgacgaccaag
ctgctgaacatcgaggtgaacgtcggccgcaccggccgggtcaccccgttcgcggtgatg
gagccggtgtccatcgcgggatcgacggtctcgatggccacgctgcacaacgcgtcggag
gtcgaacgcaagggcgtgctgatcggcgacacggtcaccatccgcaaggcgggcgacgtg
attcccgaggtgctgggtccggtggtggacgcgcgcaccggcgcggagcgcgcgttcgtg
atgccgacgcactgcccggcctgcggcaccgaattggccccgcagaaggagggcgacgcc
gatatccgctgcccgaaccagcagttctgtcccgcccagctgcgtgagcgggtgttccac
gtggcgggtcgcggcgcgttcgatatcgagtcgctcgggtacgaggcggcgaacgatctg
ctgaagtcgggggtgatcaccgacgagggtgatctgttcgacctcgatgaatcccgcttg
ctggccaccacgctgttcgccaacaaggacggcgggttgtccgcgaacggccgccgcctc
ctggacaacctggacgtggccaagagccggccgctgtggcgggtgctggtggcgttgtcg
atccggcacgtcgggcccactgccgcacgggtattggcgcgggagttcggcagtctcgac
cggatccaggacgcctcggccgaggagctggccgccgccgacggggtcgggcccaccatc
gcggcggcggtcgcggaatggttcaccgtcgaatggcatcgcgcgatcgtcggcaagtgg
cgcgccgcgggcgtgcggatggccgacgagcgcgacgagtccatcgagcgcacgctcgaa
gggctctccatcgtcgtcaccggctcgctggacgggttctcccgcgacggcgcgaaggag
gccattctggtgcgtggcggcaaggcggcgggttcggtgtcgaagaagaccgcgttcgtg
gtgatcggtgatgcgccgggctcgaaggcggccaaggcggcggaactcggggtgccgatc
ctcgacgaggacgggttccggttgctgctggaggctgggccggacgcggtgacgccgcag
tccgaaaccgggtccgaaccggaagattaa
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