Nematolebias whitei (Rio pearlfish): 119407592
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Entry
119407592 CDS
T08042
Symbol
ldlrb
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03272
Virion - Hepatitis viruses
nwh04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
119407592 (ldlrb)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119407592 (ldlrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119407592 (ldlrb)
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119407592 (ldlrb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Plasmod_Pvs28
Psg1
EGF_3
Vgb_lyase
DUF5050
TMEM154
Motif
Other DBs
NCBI-GeneID:
119407592
NCBI-ProteinID:
XP_037530341
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Position
3:complement(1588756..1594079)
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AA seq
839 aa
AA seq
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MWTGLSSWCCLCVLLHCSSRADAALTCTSAQFKCGNGRCITHKWICDGTDDCGDGSDELP
AVCELKSCSESQFNCGAPTNECIPRRWHCDGAADCKNGADETNCTAKLCKDDQFQCASGQ
CVSKMFVCDNEDDCSDGSDEKSCPKPTCSSTSFQCNNLVCVPALWLCDGDVDCADGSDEW
PKNCRGKEPEKTPLPCGAQDFRCGSGSCIHSSWRCDGEEDCSDRSDELNCNQTSCRPDQF
RCNNGTCIRDGLRCNSERDCVDGSDELGCSSEDACKHPTKFRCGSGECIRMDNVCDKDRD
CSDGSDEPSGVCGTNECLTANGGCAHECTDLKIGHSCSCPAGYRLKTDNHTCEDVDECEL
PDVCGQVCINLPGSFKCDCNDGYEMDPTSNTCKAESGTVPTLFFTNKHEVRKITVDRSEY
VRLMSQLKNAVALDLDLPNKKIFWSDLSLKKIFSSRMDEAGDSSRHSVVIGSWIEAPEGV
AVDWIHGNIYWTDSILKTVSVATTDGSKRRTLVTENLGKPRAITVDPVNNFMYWTDWGEE
PKIEKCGLNGAGRSVLVKDDIEWPNGITLDMVNQRLYWADSKLHTISSIDVNGGTRHTVL
SGVEKLHRPFSLAVFEEKVFWTDASKSAIFSANRWTGRDMRELVSDVGQPEDLVLHHSLK
QPLGVNWCTQGHRTGAGCEFLCLPAPVTEQSSAQFTCTCPDNATLHTDMRTCVREGSAAP
PPPTKQPTSTRPTSSSTIQSTQKPADTQGRVQPAAPAEAPSSHPAALYVALPLVILVVVA
LGAVLLWRQWRVKSANTIHFDNPVYQKTTEDELHIYRNGSDGYVYPERQMVSLDDLDVA
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtggacgggcctgtcctcctggtgctgcctctgcgtgctccttcactgctcgtctcgc
gcagacgctgccctcacgtgcacctccgctcagttcaagtgtggaaacgggcggtgcatc
acacacaagtggatctgtgacgggacggacgactgcggcgatgggagcgacgaactgccc
gccgtctgcgagctcaaaagttgctcggagtcgcagtttaactgcggcgctccgaccaac
gagtgcatcccgaggaggtggcactgcgacggcgccgctgactgcaagaacggagcggat
gagacaaactgcactgcgaaactatgcaaagacgatcagtttcagtgcgccagcggccag
tgcgtgtccaagatgtttgtctgtgacaacgaggacgactgctccgacggctcggacgag
aagtcctgccccaaacccacctgcagctccacctccttccagtgcaacaacctggtctgt
gttcccgccctgtggctctgcgatggagacgtggactgcgccgacggctccgacgagtgg
cccaagaactgccgagggaaggagccggagaagacgccgttgccgtgcggcgcccaggac
ttcaggtgtgggagcgggagctgtatccacagcagctggaggtgtgacggagaagaggac
tgctctgaccgatccgatgagctcaactgcaaccaaacttcttgtcgtccggatcagttc
cggtgcaacaacggcacctgcatcagagacggcctccggtgtaactcggagcgtgactgt
gtcgacggcagtgacgagctcggctgcagctccgaggacgcgtgcaaacaccccacgaaa
ttcagatgtggcagtggggaatgcatcaggatggacaacgtgtgcgacaaggacagagac
tgcagcgacggctctgatgaacccagcggtgtgtgtggaacaaacgaatgtctgacggca
aacggaggctgcgctcatgaatgcaccgacctgaagatcggccacagctgctcctgcccc
gccgggtaccgcctgaagaccgacaaccacacctgtgaagacgtcgatgaatgtgagctt
ccggacgtctgcggtcaggtctgcatcaacctgcccggcagcttcaagtgcgactgcaac
gacggctacgagatggaccccacgagcaacacgtgcaaagctgagtcagggacggtgccc
acgctgttcttcaccaacaagcacgaggtgaggaagatcacggtggaccgcagcgagtac
gtcagactgatgtcgcagctgaagaacgcagtggctctggacctggacctgccaaacaag
aagatcttctggtctgacctgtctctgaagaaaatcttcagctccaggatggacgaggcc
ggcgactcctctcgtcacagcgttgtgatcggcagctggattgaggctccagaaggtgtc
gcagtggactggatccatggcaacatctactggactgacagcattttgaagaccgtctcc
gtggcgaccacagacggcagcaagaggagaaccctggtgacggagaacctcgggaagccc
agagccatcacggtggacccggtgaataacttcatgtactggacagactggggggaggag
cctaaaattgagaagtgcgggctaaacggcgccggtcgcagcgtcttggtgaaagacgac
attgaatggcccaacggcatcactcttgacatggtcaaccagcgtctgtactgggccgac
tccaagctgcacaccatctccagcatcgacgtgaacggagggacccgacacacggtgctc
tccggtgtggaaaagctccaccgacccttctcgctggccgtctttgaggagaaagtcttt
tggacggacgccagcaagagcgccatttttagtgcgaaccgctggactggacgggacatg
agggagctggtgtctgacgtggggcagcccgaggacctggtgctccaccacagcctcaag
cagccgctcggtgtgaactggtgcacgcagggccaccgaacgggtgcagggtgtgagttt
ctgtgcctccctgctcctgtgacggagcagagctccgcccagttcacctgcacctgtccg
gacaacgccacgctccacaccgacatgaggacatgtgtccgagaaggctcagcggcacct
ccacctcccaccaaacagcccacctccacccggcccacgagtagctccacgatccagagc
acacagaaacctgctgatactcaaggcagagtccagccggcggcgcctgcggaggcgccg
tcctcccacccggctgcgctctacgtggcgctgccgctcgtgatcctcgtcgtggtggcg
ttgggagcagtgttgctatggcgacagtggcgagtgaagagcgccaacaccatccacttc
gacaacccggtgtaccagaaaaccacggaggacgagctgcacatctacaggaatggctcc
gacggctacgtgtaccccgagagacaaatggtgagcctggacgacctggatgtagcctaa
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