Nematolebias whitei (Rio pearlfish): 119408700
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Entry
119408700 CDS
T08042
Name
(RefSeq) protocadherin gamma-C5
KO
K16497
protocadherin gamma subfamily C
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119408700
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119408700
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
RET_CLD1
Motif
Other DBs
NCBI-GeneID:
119408700
NCBI-ProteinID:
XP_037531468
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Position
4:complement(20324553..20340468)
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AA seq
996 aa
AA seq
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MDSGWRKRSRGGGGGGGGRLWRLYFCLACVSSASAQLSYSVPEELSPGSVVGNVAKDLGL
TAQQIVQRKLRVQSESGVEYFELKEVTGDLVIKQKIDREQLCELRSSCSLHLQLLVENPL
QIHRAVVDVLDVNDNAPRFSTSTISLEVSEAASPGTRFRLESAHDPDVGANSLRTYQLAA
NDFFILKVETKSDGSKFPELVVDKALDREARASFRLMLTAVDGGQPEKSGSTLLLIKILD
VNDNAPVFEEPVKKVTLLETVALGTLVTKLNATDADAGSNGDISFLFGKYTSERVLQLFS
VDSKSGEIRVKGSVDYEKGASYHITVQARDGGSPAMEGSCNVIVDVTDENDNAPEVTLTS
LTSPIKEDSDPGTVIALISARDLDSGVNGQVTLTIPPGLPFKLNSAFGMHYNLITASRLD
RETVPEYTVVIKATDAGSPPLSSQISFVVKLSDVNDNPPIFSQPSYSVDIPENNAPSSPI
TAVSATDPDLGENAHVSFSILPSMVQGSPISSYVYINPETGHIYSMRSLDHEQLKNFRIE
VQAQDAGVPPRTTNVTVHVFVVDVNDNAPVMVHPSHPKDKRLQLAVPPSAGPGHLINKLV
AVDADSGHNAWLFYSIAPGPNVGMFRIGAHTGELRTARKLAEEEGGSAYDITVVIQDNGD
PPKSSSVNITVTVDEKAAANEAPVIPHHNQFYHRTGMPDITLYLIISLACVSGVAFITFV
VFMVRCLRHRDPMLGDSECCFCCYDRHRPSRYHQRPSKDLHLQLNTDGPIRYMEVVGGPQ
DPHMRTYRPCYSTISSRSDFVFMKTPMLSHNNTLNTTLSRKQLMNSVSEFREFPFAHVCV
QKDCVKQEFSKNPHMPYGTQIRWTTKNGTRATGGPEVAMGTGPWPQPPTEAEQLQALMAA
ANEVSEATATLGPGTMGLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQALAQQ
ATQQALPPPQSSGQAEPPKAAQTPASKKKSTKKEKK
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggactccgggtggaggaagcgctccagaggaggaggaggaggtggaggagggaggctg
tggaggctttacttctgtctggcctgcgtgtcctctgcctcggctcagctcagctattcc
gtcccggaggagctcagtccgggctcggtcgtggggaacgtggctaaggatctgggtctt
acagcccagcagatcgtccagaggaagctgcgcgtgcagtcggaatcaggggtggagtat
ttcgagctgaaggaggtgaccggagatctggtgattaaacagaaaatcgacagggagcag
ctgtgtgagctgaggtcatcgtgctcactgcacctgcagctgctcgtggagaaccccctg
cagatccaccgggccgtggtggacgttctggacgtgaatgacaacgctccgaggttttcc
accagcaccatctccctggaggtgtccgaggcggcctcgccggggacgcggttccgtctg
gagagcgcgcacgatccagacgtgggtgccaactctttacgcacgtaccagctggcagcg
aacgacttcttcatcttaaaagtggaaactaaaagcgacggcagcaagtttccagagctg
gtggtggacaaggctttggacagggaggcgcgggcgtcgttccgcctgatgctcacggct
gtggatggggggcagccggagaaatctggctccactcttctgctcattaaaatcctggat
gtgaacgacaacgcgccggtctttgaagagccggtgaagaaagtcaccctgctggaaact
gtggcactcggcactttagtcacgaaattaaacgcgacggacgcggatgcgggcagcaac
ggggacatatccttcctgttcggtaaatacacgtcggagcgcgtgctccagctgttcagc
gtggactctaaaagcggagagatccgtgtgaagggctccgtggattatgaaaagggcgca
tcttatcacatcaccgtgcaggccagagatgggggctcccccgccatggagggatcctgc
aacgtcatagtggacgtcactgatgagaacgacaacgcgccggaggtgacgctgacgtca
ctgacaagccccatcaaagaagactcggatccagggactgtgatagccctcataagtgcc
agggatctggactctggcgttaatgggcaggttacattaactatccccccagggttgcct
tttaaactgaactcagcttttggcatgcattataatctgatcactgccagcagactggac
cgtgagactgtcccagagtacacggtggtcatcaaggccactgatgctggctccccgcct
ctttcatcacaaatatcctttgtggtgaagctctcagatgtaaatgacaaccctcccatc
ttctcccagccttcatactccgtggacatccctgaaaacaacgcccccagctcccccatc
actgctgtgtctgccacagacccagacctaggtgagaatgctcacgtctccttttccatc
cttcccagcatggtccagggctcacccatatcatcctatgtgtatattaacccagagaca
ggacacatctacagcatgcgctccctggatcacgagcagcttaaaaacttccgcattgag
gtgcaggcccaggacgctggggtgcccccacggacgacgaacgtcactgtgcatgtgttt
gtggtggatgtgaatgacaatgcgccagtgatggttcacccctcccaccctaaagacaaa
agactgcagctggctgtgccaccatctgctggccctggtcacctcataaataaactggtg
gcagtggatgcagacagtgggcacaatgcgtggttgttctactcaatcgcacccggacca
aatgttggcatgttccgcattggggcccacaccggggagctccgcacagcccgcaagcta
gcagaagaggaagggggctcagcttatgatataacagtggtcatccaggataatggtgat
ccaccaaagtccagctctgtgaacattacagtaactgtggacgagaaggctgcagccaat
gaagctcctgttatcccccaccacaaccagttctaccaccgcaccgggatgcctgacatc
actctgtacctcatcatctctctcgcctgcgtgtcaggcgttgcgtttattacgtttgtg
gttttcatggtgcgctgcctgaggcaccgggacccaatgctgggggactccgagtgctgc
ttctgctgctacgatcgccacaggcccagccgctaccaccagaggcccagcaaagacctg
cacctgcagctcaacactgatggacctatacgatacatggaggtggtgggaggcccccag
gatccacacatgcgcacctacaggccctgctactccaccatatccagccgaagtgacttt
gtatttatgaaaacacccatgctgagccacaacaacacactcaacacgacgctcagcagg
aagcagcttatgaactcagtcagtgagtttagggagtttccatttgcccatgtttgtgtt
caaaaagattgtgtgaagcaggagttttccaaaaatccccacatgccatacggtacacaa
atacgatggacaacgaagaatgggacaagggcaactggaggacctgaggttgccatggga
actggtccctggccccagccccctactgaagccgagcagcttcaggcgctgatggctgca
gccaacgaagtaagcgaggccacggccaccctcgggcccggcaccatgggtctgagcacc
cggtacagcccccagttcaccctgcagcatgtgccggactaccgccagaacgtctacatc
cccggcagcacggccaccctcacctccaacccccagcagcagcaagccttggctcagcag
gccacgcagcaggcgttgcccccgcctcagtcctcgggccaggccgaaccccccaaggcg
gcccagacccccgcctccaagaagaagtccaccaagaaggaaaagaagtaa
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