Nematolebias whitei (Rio pearlfish): 119413434
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Entry
119413434 CDS
T08042
Symbol
trpc5a
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
nwh01009
]
119413434 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
nwh04040
]
119413434 (trpc5a)
Protein phosphatases and associated proteins [BR:
nwh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119413434 (trpc5a)
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119413434 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
Motif
Other DBs
NCBI-GeneID:
119413434
NCBI-ProteinID:
XP_037536445
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All DBs
Position
1:complement(40336940..40522936)
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AA seq
1100 aa
AA seq
DB search
MNPMTQLYYKKATYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEVGTHPGCSFLRGGGFGRGFPGIRXKHWPVKKKSCLFSCFTFPLPPPPPPQIYLLAP
KSALGRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVL
GFIWAEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMW
HPTLIAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFA
NGLNQLYFYYETKASEEPNNCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKA
RHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFD
EGGTLPPPFNIIPSPKSVWYLLMWLHTKLCRRGQPPRESSHKCENLREFTERHADSLIQN
QHYQEVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRH
YSSSSETTKDDAAVASEDDSESGDGSGGGGGGGGGGGGGGVQKSKSVTFSNTVEDDRRPG
PTLGVSALVRSISGMTRIDKGQEGQVEEVIGWGEEEEEEEGKPKSNGLKTTVIPPSSTTI
LPSSSSSLSSTFSSSLVRTKNRLQRLSAPSAKTDSFKRLSYLFSRSKRKAPPMPLALQSP
PSFTISDGLLRPLGGHSHSDFGLSDVTRSDSHLNEVGRSVDNPSFSPRRSNGRDSLLALP
LPPPCPCQSLHCASNMSESSARLLDSSEDVFQSDGVERAGEGSVEGGGGLRMMMGGWVGP
CEDVLGDNCDVIEDSVTTQL
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgacgcagctgtactacaagaaggcgacgtattcgccgtacagagaccgc
atcccgctgcagatcgtacgcgctgaagtggagctgtctgcagaggagcgggcctacctc
actgctgtagagaaaggtgactatgcaggggtcaaacacgccctccgcgaggcggaggtc
tactacaacatggacgtgaactgtctggaccctctgggccgcagcgcgctcctcatcgcc
atcgagaacgagaacctggagatcatggagctcctgttggaccacggcatccacacgggc
gacgccctgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgctgtcc
caccgcaggccgagcggagagaaacaggttccctcactgatgatggacagccagttctca
gagttcacccctgatataactcccatcatgctcgctgctcacaccaacaactatgagatc
atcaagctgcttgtccagagaaaagtcaccatacccagaccgcaccagatacgatgcgat
tgtgttgagtgcgtgtccagttcagaggttgacagccttcgacattcacggtctcggctc
aacatctacaaggctctggcctcgccgtctctcattgcgctgtccagtgaagatcccatc
ctaacggccttcaggctgggctgggaactcaaagaactcagcaaggtggagaacgagttt
cgtcaagagtacgaagagctgtctcagcagtgcaaacgtttcgccaaagacctcctggat
caggccagaagctcgagagagctcgagaccatcctgaaccacagagacaatgaccagagt
gaggaactggaccccaggcagtgccacgacttggccaagctcaaactagccatcaagtac
caccagaaggaggtagggacccatcctggttgcagttttttaagaggaggcggctttggc
agaggctttcctggaatcagatagaaacattggccagttaaaaagaaaagttgcttattc
tcctgcttcacctttcctcttcctcctcctcctcctcctcagatctacctgttggcacca
aagagcgctctgggacggttcatcaagaagcccttcatcaagttcatctgccacacagcg
tcctacctgaccttcctcttcctcctgctgctggcctctcagcacatcgcccgcaccaac
ctgcacatgcagggccccccacccaccattgtggagtggatgattctcccgtgggtgctg
ggcttcatctgggcagagatcaaggagatgtgggacggaggattcacagagtacatccac
gactggtggaacctgatggactttgccatgaactccctctacctggccaccatctctctg
aaaatagtggcgtacgtcaagtataactcgtctcgtcccagggaggagtgggagatgtgg
cacccgacgctcatagccgaggctctgttcgccatcgccaacatcttcagctcgctcaga
ctcatctcgctcttcacagccaactcccacctcgggcctctgcagatctctctggggagg
atgctgctggacatcctcaagttcctcttcatctactgtctggtcctgttggcgtttgct
aacggcttaaaccagctctatttctactacgagaccaaggcgtctgaagaaccaaacaac
tgcaaaggaatccgctgtgaaaagcagaacaacgccttctccacgctgttcgagactctc
cagtccctcttctggtccatcttcgggttgctgaacctgtacgtgaccaacgtgaaggct
cggcacgagttcacagagttcgtcggggcgacgatgttcgggacgtacaacgtgatctcg
ctggtggtcctgctcaacatgctgatcgccatgatgaacaactcgtaccagctcatcgcc
gaccacgccgacatcgagtggaagttcgcccgcaccaagctgtggatgagctactttgac
gagggcggcacgctgccgccgccgttcaacatcatccccagccccaagtccgtgtggtac
ctgctcatgtggctccacaccaagctgtgcaggagaggccagccacccagggagagctcg
cacaagtgtgaaaacctccgggagttcacggagcgtcacgccgacagtctgatccagaac
cagcattaccaggaagtgatccgaaacctggtgaagaggtatgtggccgccatgatacgc
agcgcgaaaacggacgaagggctgacggaagaaaactttaaggagctgaaacaagatatc
tccagtttccgctacgaggtgctggatctccttggcaaccggcgtcctccgcggcgacac
tactcttcgtccagcgagactacgaaagatgacgccgccgtggcgtcagaggatgacagc
gaatcgggagacggcagcggaggaggaggaggaggaggaggaggaggaggaggaggagga
gtccagaagtctaaaagtgtcaccttctctaacacagtggaagacgacagaaggcccggc
ccgacgcttggcgtgtcggcgctggtgcgctccatttcaggaatgacacggatagacaag
gggcaggaggggcaggtggaggaggtgattggatggggggaagaggaggaggaagaggag
gggaaaccaaagagcaatgggttgaagacgaccgtcatccccccttcctccactacgatc
ctcccctcgtcgtcttcgtcgttgtcctcgacgttctcctcgtcgctcgttcgcacaaag
aaccgcctgcagcgtctctcagccccgagcgcaaagacagactccttcaaacgcctctcc
tacctgttctcgcgctccaaacgcaaagccccgcccatgccgctcgccctccagtccccg
ccttccttcaccatctccgacgggttgctccggccgctggggggccacagtcactccgac
ttcggactcagcgacgtcacaaggagcgacagccacctgaacgaggtgggccgctcggtg
gacaacccgtcgttctcgccacggaggtcgaacggacgggactcgctcctggcgctgccc
ctccctcccccgtgcccctgccaatccctgcactgtgcttccaacatgtccgagtccagc
gcgcgcctcctggactccagcgaggacgtttttcagagcgacggcgtggaaagggcgggc
gagggcagcgtggaggggggaggggggctgaggatgatgatgggcgggtgggtgggaccc
tgtgaggatgtcttaggggacaactgtgacgtcatagaggactccgtcaccacgcagcta
tag
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