Nematolebias whitei (Rio pearlfish): 119415957
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Entry
119415957 CDS
T08042
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
nwh04040
]
119415957
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119415957
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
IQ_SCN5A_C
Na_trans_assoc
PKD_channel
Motif
Other DBs
NCBI-GeneID:
119415957
NCBI-ProteinID:
XP_037539055
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All DBs
Position
10:9888739..9911509
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AA seq
1635 aa
AA seq
DB search
MSWSGFWSSRAQRAEQLRRSSQLKLSSSQRSQLLGNFEVRAALQNEQMSSLLPPVGTEVF
RRFTPDSPEKNHQKHNAEEEEQKNKQDPPKAANHLEAGKTLPFIYGDTPPELLGTPLEDL
DPFYQSQKTFIALCKHQIIHRFNSESACYLFSPFNRLRTAAIKILLHPFFSLFLILTILT
NCVFMVFRVPVLKNAEEYVFMTIYACEVILKLLARGVCLGRFTFLRDPWNWLDVLNIIAF
VVQLFVLEKLYALTTIARVLKLFAYRPDLKKTTEALIQLVKRLADVIILAAFFLSILALI
GLHFFMGVLRNKCLSWSTHAETADNMTTISPLVLDNFTSSFPDGHVNFSDYIHDWKNFYY
LPDYVDPLVCGNSSDSVACPTGMICLKTGRNPNYGFTNFDSFGWSLLALISIMMQDFWEN
LLKLTMQGAGKTSVSVFVLAFFPGCFLVLSLIVAVVAMALAEQKKAESAEAQQQEEEYNR
IVKVLKKGEEVEEQASGRAELLDEQESPQKKTLTAQSQEVEHVTMEEHEDDLRPPRCAFA
HNILKGDCCGCWRRLKERLHPFVTSWLFDLGIILSIILNIIFMATEHYPMMEETYNLLSN
TNLVFLAIFTLELLLKLMTLGAFGYFQDRWNIFDFIVVVLGLLDVGLEGVQGLSMLRSLQ
LLRALRLGRWWSTLRALMRIAWSSVSLLGLVLVFVVFMFAVVSMELFQRDYQDLVCRIST
DCTLPRWHMNDHFHAVLLVFRVLFGEWIETMWDCMEVSNQTVCVIFYMTVLFTGNLLVLT
LFLNLLLTSFCDERLTAKVGKETITKWTKTWILARFRTLKGQTSSETEENGRKEQLALRT
VTSDQQNLESCHGNQTKDSCVVSPCPADEALVKTGEQKQCEDVQEFKDPETGSKPEDCCC
ECCYRCCAIQDLDTSQGAGRVWFKFRTACLLIVQHRFFEAFIILVILLSIAALMFESINP
QHRPILQMVLDIADQVFTYIFLMEMLLKWIALGFKKYFRSFWCWLDFIVLDVALFCLIFN
SLGYSTEPLRAVRTLRALSRFKGMKMVLRWMAASVPSMCSTLLVILFVWLIFSILGVNLF
AGKFAHCFNTTSGTFAPEFLVENKSMCLSLSLNSTEVHWKNIKFNFDNVGMGLLSLLIMA
TSTGWPDIMYSAVDSREVELQPVYESNQYMYLYFVFFIIFGCFFTSILFIKAFIDALHQY
RHKVGAKHVFMTNDQLKFHGTVRKMFSKTPEKAVPRPQNQCQARLFDLVTSPIFEIVVMV
LICVYVVVMMVETDDQSMKIEMVMVWIFFVIIILFYIEFILKIVALRQHYFSFGLNIMDF
VILILVTLGIIIDDLLSKYFISPGFLPVLRLARICRILPLCHWARGIQKLLVSFLMSLPA
LLNIGLLFFLVTYTYAYVGMHIFGYMKKEAMIDDMFNFETFGNSMISMILVSTSSGWDGL
LSPIMNTPPDCDLDTDCGSPMAGIAFFTSYILLYLMLVVHLFIAVVLESFSSREPEELLS
DEHLQMFYNAWRKFDLDASRVIQYSQLSDFCDELQDPLKIPKPNTIRLVHMDLPLLPGDQ
ICCVDVLKALTTQVFGESGQMDTLKARLEEKFSIHKTQVSQEPISSTLKRKQEEVAAGVI
QRAFRRHHLHHLDKV
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgtcctggtctgggttttggagcagcagggcgcagcgagcagagcagctgaggagaagc
tctcagctgaaactgagctcctctcagaggagccagctgctcgggaactttgaagttcgg
gcggcgctgcagaatgaacaaatgagctctctgctgccacctgttggtacggaggtcttc
agacgcttcacgccggattctcctgaaaaaaaccaccaaaaacacaatgctgaggaagag
gagcagaagaacaaacaggacccgcccaaagcagccaatcacctggaggcaggaaagacc
ctcccctttatctatggagacacgccccctgagcttcttggtaccccattggaggatctg
gatccgttctaccaatcacagaagaccttcatcgctctttgtaaacaccagatcatccac
aggtttaactctgagtcggcttgttacctgttcagtccgtttaatcgcctgaggactgcc
gccatcaagatcctcctccaccctttcttcagtttgttcctcattttgacgattctgacc
aactgtgtgttcatggtgtttagagttcctgtgttgaaaaatgctgaggagtacgtgttc
atgaccatctatgcctgtgaggtgatcctgaagcttctggcccgaggcgtctgcttggga
cgcttcaccttcctcagagatccctggaactggctggatgtcctcaacatcatcgcgttt
gtggttcagttgtttgttttagaaaaactttatgctctgacaacaattgcacgtgtgttg
aagctcttcgcctacagaccagacctgaagaagaccactgaagctttaatccaattagtg
aagaggcttgccgatgtcatcatcctggccgcgttcttcctcagtattttagctctgatt
gggcttcatttcttcatgggagtcctcagaaataaatgcctgtcttggtcaacccatgct
gaaacagcagacaacatgaccactatatcacctctggtcctggacaacttcacgagcagc
ttccctgatggacacgtcaacttctctgactacatccatgattggaaaaacttttattac
ctgcctgattatgttgatcctctggtgtgtgggaactcgtcggattctgtggcctgtcca
acgggaatgatctgtctgaagaccggaagaaaccctaactatggattcaccaactttgac
tcgtttggttggtctctgctggctctgattagcatcatgatgcaggacttctgggaaaac
ctgctgaaactgacgatgcaaggagcaggtaaaacctctgtgagcgtctttgtcctggcc
ttcttccccggatgtttcctggtgctcagcctcattgtggcggtggttgccatggcgctg
gcagagcagaaaaaggcggagtctgctgaggcccaacagcaagaagaagaatacaatcgg
attgtgaaggtgctaaagaagggggaggaggtggaggaacaggcctctgggagggcggag
cttctggacgaacaggagtcaccgcaaaagaaaacactgaccgcacagagccaggaggtg
gaacacgtcaccatggaagaacatgaggatgaccttcgaccccctcgctgtgcctttgct
cacaacatcctgaaaggtgactgttgtggctgctggcggcggctcaaagagaggctccac
ccctttgtcacgagctggctctttgatctggggattatcctttccatcatcctcaacatc
atattcatggccacagaacattatccaatgatggaggaaacctacaacctgctgtccaac
acaaatctggtgtttctggccatcttcacattggagcttctcctgaaactcatgactctt
ggtgcgttcggctacttccaggaccgttggaacatctttgacttcattgtcgttgtcctc
ggtctgttggatgttggactggaaggagtgcaggggctgtccatgctgcgctctctgcaa
ttgctgcgagccctgaggttgggtcggtggtggtccacactgcgtgcactgatgaggatt
gcatggtcctcagtgagtcttcttggtctggttctggtttttgtggtcttcatgttcgcc
gtggtcagtatggagctcttccaaagggactaccaggacttggtctgtaggatctcgact
gactgtacacttcctcgctggcacatgaacgaccatttccacgctgtcttgctggtcttc
agagtcctgtttggcgagtggattgaaaccatgtgggactgcatggaggtgtcaaatcag
accgtttgtgtcatcttctacatgacggttctgttcaccggaaacctgctggtcctgaca
ctgttcttgaatctgctgctgacatcattctgtgatgagagactgacagccaaagtagga
aaagaaaccatcacaaagtggaccaagacctggattctggcgagattcaggaccttgaag
ggacaaaccagttcagagactgaagaaaacggcaggaaggaacaattggccttaagaacc
gtcacctcagaccagcagaaccttgaaagttgccatggcaaccagaccaaggactcctgt
gttgtgtcaccttgcccggctgatgaggccctggttaaaacaggagagcaaaaacaatgt
gaagacgtccaggagtttaaagaccctgaaacaggaagtaaacctgaggactgctgctgt
gaatgttgttatcgctgctgtgcaatccaggatttagacacgtcccagggtgcagggagg
gtctggtttaagttcaggacggcttgtctcctcatcgttcaacacagattcttcgaggca
ttcattatcttggtcatcctgctgagcatcgccgccttgatgttcgagagcatcaaccct
cagcatcgtccaatcctgcagatggtcttggacatagcagaccaggtgttcacctacata
tttctgatggagatgcttctcaaatggatcgccctcgggttcaaaaagtacttcaggagc
ttctggtgttggctcgacttcatcgtcttagacgtggctctgttctgtctgattttcaac
tcgctgggctactcaacggaaccgctaagggccgtaaggaccttgagggccctgtctcgc
tttaaaggcatgaagatggtgctgcgatggatggcggcgagtgtcccctctatgtgcagc
acgttgctggttattctgtttgtctggctgatattcagcatcctgggggtgaacttgttt
gcaggaaagtttgcacactgcttcaatacgacgagtggaacatttgctccggagtttctg
gtggaaaacaagtccatgtgtctttccctttctttaaattctactgaggtccactggaag
aacattaagtttaactttgacaacgtggggatgggtctcctttctctgctgatcatggca
acatcaacaggctggccggacataatgtactcagctgtggactccagagaggtggagtta
cagccagtgtatgagtccaatcagtacatgtacctatacttcgtctttttcatcatcttc
ggctgcttcttcacctccatcctgttcattaaagccttcattgatgcactccaccaatat
agacacaaggttggagcaaaacatgttttcatgacgaatgatcagttgaaattccacgga
actgtgaggaaaatgttctccaagacacctgagaaagctgttccacgaccacagaaccag
tgccaggccaggctctttgacttggtgacttccccgatctttgagattgtggtgatggtg
ttgatctgcgtatatgtggtggttatgatggtggagactgacgaccagtccatgaagata
gaaatggttatggtctggattttcttcgtcatcatcatcctcttctacattgaattcatc
ctgaagattgttgctctccgacaacactacttcagcttcggcttgaacatcatggacttt
gtgattctcatcttggtgaccttaggtatcatcatcgacgacctgttatccaagtatttc
atcagtccaggtttcctccccgtcctccgactggctcgtatctgtagaatcctcccgttg
tgtcactgggccagagggatacagaagctgctagtgagcttcttgatgtcacttcctgct
ctcctcaacataggcctgctcttcttcctcgttacgtacacctatgcttacgttggcatg
cacatctttggttacatgaagaaggaggcgatgattgatgacatgtttaactttgagacg
ttcgggaacagcatgatcagcatgattctcgtcagcacttcctctggatgggacggtttg
ctgagtcccatcatgaacacgcctccagactgcgacctggacacggactgcggcagccca
atggcgggcattgccttctttacctcctacatcctcctgtatttgatgctggtcgtccac
ctcttcatcgctgtcgtcctggagagcttcagcagcagggaaccagaagagctgctcagt
gacgagcacctgcagatgttttataacgcctggaggaagtttgatctggatgcctcgcgg
gtcatacagtacagccagctgtcagatttctgtgatgaactccaggatcctctgaagatc
cccaaaccgaacaccatcagactggtccacatggatctgcctctgcttcctggagaccag
atctgctgcgtggatgtgctaaaagcactcaccacacaggtgtttggtgaatcaggacag
atggacactctcaaagccagattggaggaaaagttcagcatccacaaaactcaggtgtcc
caggaaccaatcagcagcaccctgaagaggaaacaagaagaggtggcagctggtgtgatc
cagcgggcattcaggagacaccacctgcaccacctggacaaagtctag
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integrated database retrieval system
