Nematolebias whitei (Rio pearlfish): 119416930
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Entry
119416930 CDS
T08042
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04382
Cornified envelope formation
nwh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
119416930
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119416930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
nwh04812
]
119416930
Cytoskeleton proteins [BR:
nwh04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
119416930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
ARMC9_ARM
WRM1_C
TPR_LAA1_C
Atx10homo_assoc
HEAT_EF3_GNC1
HSF2BP_C
Motif
Other DBs
NCBI-GeneID:
119416930
NCBI-ProteinID:
XP_037540057
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Position
11:29452519..29465107
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AA seq
713 aa
AA seq
DB search
MMAPDPLRSATTVGGAEDTSLALPSDRSLSSGKQRVLEQVHSIKRTKSKHGQSSPLSPTS
PSPKNFTTYNEFGTYKLMASKGNDLVSRTNSTMSAGYNKLANYQKSRSQSARFPIRRNVS
SSSAWEQQINTTVGQKKPNGLTTSRSDPTLAPPRSPGTATMRLKGQNAFQVHQQSTSSMV
NGVYHSDSQTRINQPPSNQIQTDGRMSTIKMSKIEQTSAVNSAMSMSDNTLKEAVELLCS
TDENGQLYGANFIQHVTFNEESTKTEVYQLGGIPALVNLLDSSNLQISTAVAGALRNLVF
KNKTNKLEVHHCGGIAKALNLLKKTNSTETKKQITGLLWNLSSDDDLKRDLIDTAMPALT
ENVVVPFISSDDDMRCVDSNVFHNTTGCLRNLSSGSVKERNKMRNCSDLINSLMSYVGSC
AEKENPDEQSVENCVCILHNLTFQLEKECPEIFNQDFQSRASVSEEKKSAPVGCFSPRSS
KVPNKISLETLPESSADSSTSGVKWLCHPKAIDNYLLLLESSTNEPTREASCGALQNLTT
SKEGSGAVSQILLQKFKSFPILESLVKSENRTIQKTTLSLLDNMSRSRMQIDMARQMLPD
LITFLDSNTEEMVFCDEEAVSLCHTVLRLMLSDSEVTKKIIDKNKVSQLIKLSENKAASY
PKGSEAASVLLYNLWNDKNLHSTVKKMGLSKNHFISRKCEEASESLFSKIQTE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaccggacccgctgcgatccgccacgaccgtcgggggcgcggaggacacctcg
ctcgcgctgccgtctgacaggagcctgagctccgggaagcagcgcgtgctcgagcaggtt
cacagcattaagaggaccaagtccaaacacggccaaagcagcccgctgtctcctacaagc
ccatcacccaaaaatttcaccacctataatgagtttgggacgtacaagttgatggcgtct
aaaggaaatgacctcgtgagtcgcaccaactccaccatgtcggcaggctacaacaaactg
gcaaattaccagaagagtcgtagtcaatctgctagatttcccattagaagaaacgtcagc
tcgtcgagcgcatgggaacagcagatcaacaccactgtcggacaaaagaaacccaacgga
ctgacaaccagtcgcagtgatcctactttggcccctcctcgttctcccggaacagctacc
atgagactcaaagggcagaatgcttttcaagttcatcagcagagcacctcctccatggtt
aatggcgtataccactctgacagccaaacacgcatcaaccagccaccttctaaccaaatt
caaacggatggcaggatgagcacaatcaaaatgtccaaaatagagcagacgtcagcggta
aactctgcaatgagcatgtcggataatactcttaaagaagctgtggagttgctgtgttcc
actgacgaaaatggccagctgtatggagccaacttcatccagcacgtcaccttcaacgag
gagagcaccaaaacagaggtataccaactcggtggtattccagctctggtgaacctgttg
gacagctccaatttacagatcagcacagctgttgctggggctttgaggaatcttgttttt
aagaataagaccaacaagctggaagttcatcactgtggtggtatagccaaggccttgaat
ctactaaagaagactaattctactgagaccaagaagcaaatcactggtctgctgtggaac
ctgtcttctgatgatgacttgaaaagagatctaatagacactgctatgcctgctctgact
gaaaatgtggtagtgccattcatctcaagcgacgatgacatgagatgtgtagactccaat
gtcttccacaacactacaggctgcctgaggaacctgagcagtggcagtgtcaaagaaagg
aacaagatgagaaactgctccgacctcatcaactcactcatgagttacgttgggtcctgt
gccgaaaaagaaaaccctgacgagcagtctgtggagaactgcgtatgcattctccataat
ttgacctttcaactggagaaggagtgtccagagattttcaatcaggatttccaatccaga
gcatccgtaagtgaggagaagaaaagcgccccagttggctgcttcagcccgaggagcagc
aaggttccaaacaagatttctttggagacacttccagaaagcagtgctgactcatccaca
tcaggagtgaagtggctgtgtcatcccaaagccattgacaactacctgcttttgctggaa
tcatccactaacgaacccactcgagaggccagctgcggtgccctgcagaacctcaccacc
agcaaagaagggtctggtgccgtgagccaaattttgcttcagaagtttaaatcttttccc
atcttggagtctctggtgaaatcagaaaaccgcaccattcagaagaccaccttgtccttg
ctggacaacatgtcccgcagcagaatgcagatcgacatggcaaggcagatgttgccggac
ttgattaccttccttgactccaacacagaggaaatggtgttctgtgatgaagaagctgtg
tcactttgtcacacagtgctgagactgatgctgtcagacagtgaggtcacgaagaagatc
attgataaaaacaaggtttctcaactgataaaattaagcgaaaataaagcggcatcatat
cctaaagggagcgaagcagcctcagtgctgttgtacaacttgtggaatgacaagaatttg
cacagcactgtgaaaaagatgggattgtcaaaaaatcacttcatcagcagaaagtgtgag
gaagccagcgagtcattgttcagcaaaattcaaacagaatga
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