Nematolebias whitei (Rio pearlfish): 119427410 Help Entry 119427410         CDS       T08042                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism nwh  Nematolebias whitei (Rio pearlfish) Pathway nwh04115   p53 signaling pathway nwh04145   Phagosome nwh04148   Efferocytosis nwh04350   TGF-beta signaling pathway nwh04510   Focal adhesion nwh04512   ECM-receptor interaction nwh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:nwh00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     119427410   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     119427410  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     119427410    04148 Efferocytosis     119427410   09143 Cell growth and death    04115 p53 signaling pathway     119427410   09144 Cellular community - eukaryotes    04510 Focal adhesion     119427410   09142 Cell motility    04820 Cytoskeleton in muscle cells     119427410  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:nwh04131]     119427410   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:nwh00536]     119427410 Membrane trafficking [BR:nwh04131]  Endocytosis   Phagocytosis    Opsonins     119427410 Glycosaminoglycan binding proteins [BR:nwh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    119427410 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C cEGF TSP1_CCN EGF Motif Other DBs NCBI-GeneID:  119427410 NCBI-ProteinID:  XP_037550944 LinkDB All DBs Position 21:complement(18868043..18875431) Genome browser AA seq 1172 aa AA seqDB search MMLCSIVCLLLLWSCEGARLAESRDDNSVYDLFELVRVNKRHNGVSLVKGADPYSPAYKV LNADLIPPLPDSSFRDLLDSIQAERGFLLLINLKQFKKTRGSLLTIEKTDGSGPIFEIIS NGKANTLDLVYSTENQLQVVSIDDADLANGHWKNLTLFVQEDRAQLFVGCEEINVSELDV PIQTLLARELADKARLRIGKGAAKDKFMGVLQNVHFVFGTTLEAILRNKGCQSGAALTDI MTLDNPVNGSSPAIRTDYTGHKSKALDSVCGFTCEDISTMFKELRGLTVIVKQLSYELQK VSTDSQLLKNLMDIHSGVCIYNGIMHKDQDEWTVDGCTECTCQNSATVCHKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCDGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQLGGRDCQGEG RHTKVCEMSPCPVNGGWGPWSPWDTCSVTCGGGIQTRKHICNDPAPKYGGKDCVGDAAMV RVCNKQDCPIDGCLSNPCFPGAKCTSFPDGSFVCGKCPIGYTGDGITCKDIDECKEVPDA CYTLNGVHRCVNTEPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCTPRNPCKDGSHNCH KNANCIYLGVFSESMFRCECRPGYAGNGRICGEDTDLDGWPNTDLICVENATYHCKKDNC PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPGQYDADRDDVGDSCDNCI FEANTDQADTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDKVGDHCDNCPL EHNPDQVDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQVDSDGDGRGDVCKDDFDQDNVLDINDVCPENFDISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSNTPTRAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLIHRPKTGLIRVVMYEGKKIMADSGNI YDKTYAGGRLGLYVFSQEMVYFSDLKYECKDA NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgcagcatcgtttgcctgttgctgctttggagctgcgagggcgcgagactg gcagagagccgtgatgacaacagtgtgtatgatttatttgagctggttcgggtcaataag aggcacaacggagtgagtctggtaaaaggcgcagacccctacagccctgcgtacaaggtc ctgaatgcagacctgatccccccgctccccgacagctccttcagggacctcctcgactcc atccaggctgagcggggcttcctcctcctcatcaacctgaagcagttcaagaaaaccagg ggcagcctcctgaccatcgagaagaccgacggatccggacctattttcgagatcatctcc aacgggaaggcgaacaccctggatttggtgtactccaccgagaaccagctgcaggtggtc tccatcgacgatgcagatctggccaatggacactggaagaacctgacgctgttcgtccag gaggacagggctcagctttttgttggctgtgaggagatcaatgtgtcagagttggatgtg cccatccagaccctgctggcccgggagctggcagacaaagccagactccggattggaaag ggggctgcaaaggacaagttcatgggagtgcttcaaaatgttcactttgtgtttggcacc actctggaagccattctaagaaataagggatgtcaaagtggagcagccctcactgatatc atgaccctggacaacccggttaatggttccagccctgccataaggaccgattacactggt cacaaatctaaagctctggactccgtctgtggcttcacgtgtgaggacatctccaccatg tttaaggagctcagaggactcactgtgatcgtgaagcagctgtcatatgaactccaaaaa gtgtctacagatagccagcttctgaaaaatctaatggacatccacagtggcgtctgcatc tataatggcattatgcacaaggaccaagatgaatggacagtggatggctgcactgagtgt acctgccagaactctgctactgtgtgtcacaaaatctcctgccctctcatcccatgcgct aacgccactgtgcctgatggagaatgctgccctcgctgtggaacaccaagtgactatgca gaggatggttggtccgcctggtctgactggacccattgttcagtgacttgtggccgcggc atccagcagcgtggacgttcctgtgaccgcatcaacagcaagtgtgatggaacctctgtc cagactcgtgactgctatctgcaggaatgtgacaaacgcttcaaacaggatggagcctgg agccactggtcgccttggtcttcctgctctgtgacttgtggtgaaggggtcatgacacaa atacgcctctgcaactctcccacaccacagctgggtggtagggactgccagggagaggga cgccacaccaaagtctgcgaaatgtcaccctgtcctgtcaacgggggttggggaccttgg tcgccatgggatacttgctctgttacatgtggtggaggaatccaaaccagaaaacatatc tgcaatgaccctgcacccaagtatggtggaaaggattgcgttggtgatgctgcaatggtt cgagtttgcaacaaacaggactgccctattgatggctgcctttcaaacccgtgcttccct ggtgcaaaatgcaccagctttcccgatggctcctttgtgtgtggcaagtgtccaattggc tacactggtgatgggatcacatgcaaggatattgatgagtgcaaagaagttccagatgct tgctatactcttaacggagttcatcgctgtgtcaacactgagccaggttacaactgtctc ccctgtcctgcacgtttctctggtcctcaacccttcggaagaggagtggaacaggcaact gctaaaaaacaggtttgcactccccgtaatccttgcaaggatggtagccacaactgccat aaaaatgcaaattgcatttacttgggcgttttctcggagtccatgttccgctgtgagtgc aggcctgggtatgctgggaatggccggatttgtggagaggacactgacctggatggatgg cccaacacagacctaatctgtgtggagaacgccacctatcactgcaaaaaggataactgt cccaaccttccaaactctgggcaagaagatcatgacaaagatggccttggtgatgaatgt gaccatgatgatgacaatgatggtatccccgatgatagggacaactgcccgagagtgtac aaccctgggcagtatgacgcagacagggatgatgttggtgacagctgtgacaactgcatt tttgaagccaacactgaccaagcagacacagacaacaacggagaaggagatgcctgtgct gttgatattgatggtgatggcattctgaatgagaacgacaactgcccgtatgtttacaac gtggaccagagagatacagacagggataaagtgggagatcattgtgacaactgtcccctg gagcataacccagatcaggttgactctgactcagatcgcataggagacaagtgtgacaac aaccaggacattgatgaggatggtcaccagaacaacttggacaattgcccctacattcct aacgccaaccaggcagaccacgacaaggatggcaagggagatgcttgtgatcatgatgat gacaatgacggcattcctgatgacaaagacaactgccgattggcatttaaccctgatcaa gtggactctgatggtgatggccgtggagatgtgtgcaaagatgattttgaccaagacaat gttctggacattaacgatgtgtgccccgagaattttgacataagcgaaactgacttccga cgattccagatggttcctttggatcccaagggtacttcacagattgaccccaactgggtg gttaggcatcaaggcaaagagttggtgcagactgtcaactgtgaccctggcattgctgtt ggtttcgatgagttcagcgctgtggatttcagtgggaccttcttcatcaacactgacaga gatgacgattatgctgggtttgtgtttggctatcagtccagctcccgcttctacacagtc atgtggaaacagatcacacagacctactggtcgaacacacctacaagagctcaaggctac tctggcttgtcaatcaaagtggtcaattctacaacagggcctggtgaacacttgaggaat gctctgtggcacactggagacaccccaggacaggtgcgcactctgtggcacgaccccaag aacattgggtggaaggacttcacggcttacagatggcatctcattcacagacccaagacg ggacttattagggtggtcatgtacgaaggcaaaaaaatcatggctgattctggaaacatc tatgacaagacatatgccggtgggcgacttggcttgtatgtcttctctcaagagatggtt tacttctcagaccttaaatatgaatgtaaagatgcataa

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