Nitrospina watsonii: NSPWAT_1092
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Entry
NSPWAT_1092 CDS
T08754
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nwt
Nitrospina watsonii
Pathway
nwt03030
DNA replication
nwt03410
Base excision repair
nwt03420
Nucleotide excision repair
nwt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nwt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NSPWAT_1092 (ligA)
03410 Base excision repair
NSPWAT_1092 (ligA)
03420 Nucleotide excision repair
NSPWAT_1092 (ligA)
03430 Mismatch repair
NSPWAT_1092 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nwt03032
]
NSPWAT_1092 (ligA)
03400 DNA repair and recombination proteins [BR:
nwt03400
]
NSPWAT_1092 (ligA)
Enzymes [BR:
nwt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NSPWAT_1092 (ligA)
DNA replication proteins [BR:
nwt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NSPWAT_1092 (ligA)
DNA repair and recombination proteins [BR:
nwt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NSPWAT_1092 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NSPWAT_1092 (ligA)
MMR (mismatch excision repair)
DNA ligase
NSPWAT_1092 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NSPWAT_1092 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
DUF2362
Auto_anti-p27
RNA_pol_A_CTD
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAI2717951
LinkDB
All DBs
Position
NSPWAT:1158299..1160305
Genome browser
AA seq
668 aa
AA seq
DB search
MPSKAEKEIEQLRRDIHHHDHLYYVLDQPEISDRDYDRLYEKLEELEAKHPELVTPDSPT
QRVGGKASEKFDPIEHTVPMMSLDNTYNVDEVRDFHNRVCKTLGTDEVEYVVELKIDGLG
VTLAYENGRFVQGATRGDGKVGEDVTANLKTMRSVPLSLDSATLKHKYLEVRGEVYMDHS
GFQKLNAAREKRGEAPFANPRNAAAGSLRLLDPTITAERPLRIWVYSTGHIEGPAFERHH
ETLETLKKLGFRTNPHTELCKNFDAVLNLIERWQEKRRTLDYDVDGLVIKVNALRSQNKL
GYTAKHPRWAVAYKYEAEEAQTKVNAIHVQVGRTGAITPVAELEPVLVAGTTVKRATLHN
EDEIKKLDVRVGDDVVIIKAGEIIPKVVRVVTPPDRQRGEPYTMPKTCPECDTPIVRQEG
EAAWRCINASCPAQLKEHLLHFASRDAMDIDHLGTAVVEQLVNSGRVKTVSDLYTLEQGE
VKNLERFAEKSAQNLIDAIAKSKQAGLSRLIHALGIRFVGQRVAQVLANTFHTMDALEKA
GFEDLESIDEIGPKIAESLRQFFDEDKNKKEIAHLQERGVVMQEERQETGDGALTGKQFV
LTGTLDKFTREEAKALIHKAGGRVTSSVSAKTDYVVAGADPGSKLDKAKKLGVTLLDEAA
FEKLLKGK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgccttccaaagccgaaaaagaaatcgaacagctccggcgcgatatccatcatcacgac
cacctgtactacgtgctggatcagccggagatcagcgaccgcgattacgaccggctttat
gagaagctggaagaactggaagcgaagcatccggaactcgtgacgccggactcgcccacg
cagcgcgttggcggcaaggcgtcggagaagttcgatcccatcgagcacaccgtgccgatg
atgagcctcgacaacacgtacaacgtggacgaggtgcgggacttccacaaccgcgtctgc
aaaaccctcggcacggatgaggtggagtacgtggtcgagctcaagatcgacgggctcggt
gtgaccctcgcctacgagaacggccgcttcgtgcagggcgcgacgcgcggcgacggcaag
gtgggcgaagacgtcacggcgaatctcaaaaccatgcgctcggtgccgttgtcgctggac
tccgccacactgaaacacaagtacctcgaagtgcgcggcgaagtgtacatggatcacagc
ggctttcagaaactcaacgccgcacgggagaaacgcggcgaggctccgttcgccaatccg
aggaacgccgccgccggatcgctgcgcctgctcgatccaacaatcactgccgagcggccg
ctgcgcatctgggtgtacagcacgggccacatcgagggcccggctttcgagaggcatcac
gagacgctggaaacgctcaaaaagctgggcttccgcaccaacccgcacaccgagctctgc
aaaaatttcgacgcggtgctgaacctcatcgagcgctggcaggagaaacgccggacgttg
gattacgacgtggatgggctggtcattaaagtcaatgcgctccggtcgcagaacaaactc
ggttacaccgccaaacatccacgctgggcggtggcttataaatacgaagccgaggaagcg
cagacgaaggtgaacgccatccatgtgcaggtggggcggaccggggccatcacgccggtg
gcggaactggagccggtattggtggcgggcaccacggtcaaacgcgccaccttgcacaac
gaggacgagatcaagaaactcgatgtgcgcgtcggcgacgatgtggtcatcatcaaagcc
ggagaaatcatcccgaaagtggtgcgggtggtgacgccgccggatcgccaacgcggcgag
ccgtacaccatgcccaaaacctgccccgaatgcgacacgccgatcgtgcggcaggaaggt
gaggccgcgtggcgctgcatcaacgcctcgtgcccggcgcagttgaaggaacacctcttg
cacttcgcctcccgcgacgccatggacatcgatcacctgggcaccgccgtggtcgaacaa
ctggtcaactccggccgcgtcaaaacggtttccgatctttacacgctcgaacagggcgaa
gttaaaaacctggagcgcttcgccgaaaaatccgcgcagaacctgatcgacgccatcgcc
aaaagcaaacaggcggggttgagccggctcatccatgcgttgggcatccgcttcgtcggc
cagcgcgtggcgcaggtgctggccaatacgtttcacaccatggacgcactggagaaggcg
ggctttgaagatttggagtcgatcgacgagatcggcccgaagattgccgaaagcctgcgc
cagtttttcgacgaggacaaaaacaaaaaagagatcgcgcacttgcaggagaggggtgtg
gtcatgcaggaagaacggcaggagacgggcgacggggcgttgacgggcaagcagttcgtg
ttgacggggacgctggataagttcacgcgcgaagaggcgaaggcgctgatccacaaggcg
ggcgggcgggtaacctccagcgtgtcggccaaaaccgattacgtggtggccggggccgac
cccggcagcaaactcgacaaggcgaaaaaactcggcgtcaccctgctcgacgaagccgca
ttcgaaaaactgttgaaggggaagtga
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