Nocardia yamanashiensis: LTV02_00525
Help
Entry
LTV02_00525 CDS
T07935
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03030
DNA replication
nya03410
Base excision repair
nya03420
Nucleotide excision repair
nya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTV02_00525 (ligA)
03410 Base excision repair
LTV02_00525 (ligA)
03420 Nucleotide excision repair
LTV02_00525 (ligA)
03430 Mismatch repair
LTV02_00525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nya03032
]
LTV02_00525 (ligA)
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_00525 (ligA)
Enzymes [BR:
nya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LTV02_00525 (ligA)
DNA replication proteins [BR:
nya03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LTV02_00525 (ligA)
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LTV02_00525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LTV02_00525 (ligA)
MMR (mismatch excision repair)
DNA ligase
LTV02_00525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LTV02_00525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UGT46047
LinkDB
All DBs
Position
102271..104394
Genome browser
AA seq
707 aa
AA seq
DB search
MDITQTDGDGQAAASGDQRVEYQRLAEEVRDHQFRYYVRDAPIVTDGEFDELFNRLVALE
EAHPDLRTPDSPTQVVGGGFTTDFQPVDHLERMYSLDNVFSADEMRQWISRVEAEAGTDI
HYVCEVKIDGVALNLVYEDGKLVRGATRGDGRTGEDVTLNARTIEDIPHQLRASADFPVP
KLLEVRGEAFMTLEDFEALNASIVAEGKPPYANPRNTAAGSLRQKDPAVTARRRLRMICH
GFGRLEGFNPESQYEAYRALAAWGLPVSAHTVRVQGADAVVDRVEYWGEHRHDIEHEIDG
QVVKVDEFSLQRRLGATSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTPFAVMQPV
TVAGSTVAMATLHNASEVQRKGVLIGDTVTIRKAGDVIPEVLGPVVDARTGAERPFVMPT
HCPECGTELAPAKEGDADIRCPNQQYCPAQLRERVFHVAGRGSFDIEALGYEAAVDLLKS
GAIGDEGDLFSLDEDKLLTTSLFTNQKGELTQNARRLLQNLETAKDRPLWRVLVGLSIRH
VGPTAARALASALGSMDAIRTASAEELAAVDGVGPTIAESLAEWFTVPWHLDIVDKWAAA
GVRMEDERDESIERNLEGLSIVVTGSLQTFTRDGAKEAILIRGGKAAGSVSKKTAFVVIG
DSPGSKADKAEELGVPILDEEGFRLLLEGGPEAVTPPAEDTAGESGE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggacatcacccagacggacggggacgggcaggccgccgcgagcggggaccagcgcgtc
gagtatcagcggctggccgaagaggtgcgcgaccaccagttccgctactacgtgcgggac
gcgcccatcgtcaccgacggcgaattcgacgagctgttcaatcgcctggtcgcgctcgag
gaagcgcatccggacctacgcacgcccgattccccgacccaggtggtgggcggcggtttc
accaccgacttccagcccgtggaccatctggaacggatgtactcgctggacaatgtgttc
agcgcggacgagatgcggcagtggatcagccgcgtcgaggccgaggccggcaccgatatc
cactacgtgtgcgaggtcaagatcgacggcgtcgcgctcaacctggtgtacgaggacggc
aagctggtgcgcggcgccacccggggcgacggccgtaccggcgaggacgtcacgctcaat
gcccgcaccatcgaggacattccgcatcagctcagggccagtgccgacttcccggtgccg
aaactgctggaggtgcgcggcgaggcgttcatgacgctggaggatttcgaagcgctgaac
gcgtccatcgtcgcggaaggcaaaccgccgtacgcgaatccgcgcaataccgcggccggt
tcgctgcgccagaaggatccggcggtgaccgcgcgccgccgcctgcggatgatctgccac
ggtttcgggcggctggaaggcttcaacccggaatcgcagtacgaggcgtaccgggcgctg
gcggcctggggcctgccggtgtcggcgcacaccgtgcgggtgcagggcgcggacgcggtg
gtggatcgggtcgagtactggggcgagcaccggcacgatatcgagcacgagatcgacggc
caggtggtcaaggtcgacgagttctcgctgcaacggcggctcggcgccacctcgcgcgcg
ccgcgctgggccatcgcgtacaagtatccgcccgaggaagccaccaccaaactgctcgac
atccaggtgaatgtcggtcgcaccggccgggttacgccgttcgcggtcatgcagccggtc
accgtggcgggctccacggtggccatggcgaccctgcacaacgcgtccgaggtacagcgc
aaaggcgtgctgatcggcgacaccgtcaccatccgcaaggccggtgacgtgattcccgaa
gtgctcggccccgtggtggacgcgcgcaccggcgccgaacgccccttcgtcatgcccacc
cattgccccgaatgcggcaccgaactcgcccccgccaaagaaggcgacgccgatatccgc
tgcccgaaccagcagtactgcccggcgcagttgcgggagcgcgtctttcacgtcgccggc
cgcggctccttcgatatcgaagccctcggctacgaggccgccgtcgacctgctcaagtcc
ggcgccatcggcgacgaaggcgacctgttctccctcgacgaggacaaactcctcaccacc
tccctcttcaccaaccagaagggcgagctgacccagaacgcccgccgcctgctccagaac
ctagaaaccgccaaggaccgccccctctggcgcgtcctggtgggcctgtccatccgccac
gtcggccccaccgccgcccgcgccctggcgtccgccctgggcagcatggacgccatccgc
accgcatccgccgaggaactcgccgccgtcgacggcgtcggccccaccatcgccgaatcc
ctggccgaatggttcaccgtcccctggcatctcgacatcgtcgacaaatgggccgcggcc
ggcgtccgcatggaagacgaacgcgacgaatccatcgaacgcaacctcgaaggcctctcc
atcgtcgtcaccggctccctgcaaaccttcacccgcgacggcgccaaggaagccatcctc
atccgaggcggcaaagcagccggatccgtctccaagaaaacagctttcgtggtgatcggc
gactcacccggctccaaagccgacaaggccgaggaactcggcgtcccgatcctcgacgag
gagggtttccgcctgctgctggaaggcggcccggaagcggtcacgccgcccgcggaggac
accgccggggaatcgggcgaatag
DBGET
integrated database retrieval system
