Neisseria zoodegmatis: SAMEA4504057_1751
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Entry
SAMEA4504057_1751 CDS
T06683
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nzo
Neisseria zoodegmatis
Pathway
nzo03030
DNA replication
nzo03410
Base excision repair
nzo03420
Nucleotide excision repair
nzo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4504057_1751 (ligA_2)
03410 Base excision repair
SAMEA4504057_1751 (ligA_2)
03420 Nucleotide excision repair
SAMEA4504057_1751 (ligA_2)
03430 Mismatch repair
SAMEA4504057_1751 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nzo03032
]
SAMEA4504057_1751 (ligA_2)
03400 DNA repair and recombination proteins [BR:
nzo03400
]
SAMEA4504057_1751 (ligA_2)
Enzymes [BR:
nzo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4504057_1751 (ligA_2)
DNA replication proteins [BR:
nzo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4504057_1751 (ligA_2)
DNA repair and recombination proteins [BR:
nzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4504057_1751 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4504057_1751 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
SAMEA4504057_1751 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4504057_1751 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
SNU80238
UniProt:
A0AB38DSA9
LinkDB
All DBs
Position
1:1893272..1895719
Genome browser
AA seq
815 aa
AA seq
DB search
MNNTARRIQELTEQLNRYAYEYYTLDAPTVPDAEYDRLFRELEALEAAHPDLRLPESPTQ
RVGGMPLDGFESVRHTVPMLSLNNAFSPQDENGTFDHAEMLAFDERVRGGLSGVQPEYVI
EPKFDGLAISLLYRNGVLVQAATRGDGTTGEDVTQNIKTIANIPLKLRGDNLPSLLEVRG
EVLMLKADFAALNEKQAADNQKLFANPRNAAAGSLRQLDSRITAKRRLHFFAYGIARIEG
GARLEEHIQELAYLSELGFSLPHGQFGVFPNIAEILAFYEHMSQKRPELPYEIDGMVVKV
NSLAQQETLGFVSRAPRWAIAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLQPVFVGGV
TVTNATLHNEGETQRKDVRIGDTVVVRRAGDVIPEVVRVVFERRPMQTIAETIAETVSDG
LQNDLFAEPAATATEQPVYPQYRLPEHCPICASEIEREEGEAVARCSGGMLCQAQRAQGL
IHFASRKAMDIEGLGQRQIEQLVAQNLVQHFADLYRLDVPTLQLMKENADKEQAADTGGT
VSDGLKTTSKKQSPTKWAENILAGIAASKQPELARFLFALGIRHVGERTAKSLAQAFGTL
EIVRRAPEPVLACLPDIGAIVARSIAHFFAQPEQQAMIDELLAVGVVPQNQTVTLPLSQY
VTPAKWLSRLPGFKISETKAAALWDLAGKNTDGLLNDNALNADWQQWRNQPENAALLLSM
RQFLEQMPSENEASVSDGLNQAVAGKTFVFTGTLPTLKRDEAQAMIEAAGGKVSGSVSKK
TDYVVAGEAAGSKLEKAHALGVAVLDEAQLMTLLA
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaccgcccgccgcattcaagaacttaccgaacagctcaaccgctacgcctac
gaatactacaccctcgacgcacccaccgtgcccgatgccgagtacgaccggcttttccgc
gaactcgaagccctagaagccgcccaccccgatttacgcctgcccgaaagccccacccag
cgcgtcggcggtatgcctttggacggctttgaaagcgtgcgccataccgtgccgatgctg
tcgctgaacaatgctttttcgccgcaagacgaaaacggcacattcgatcacgccgaaatg
ctggcgtttgacgagcgcgtgcgcggcggattatccggcgttcaacccgaatacgttatc
gaacccaaattcgacggcctcgccatcagcctactctaccgcaacggcgtgctggttcag
gcggccacgcgcggcgacggcaccaccggcgaagacgttacccaaaatatcaaaaccatt
gccaatatcccgctgaaactgcgcggcgacaacctgccctcgctgcttgaagtgcgcggc
gaagtgctgatgctcaaagcggattttgccgccttaaacgagaaacaggctgccgacaac
caaaaactgtttgccaacccgcgcaatgccgcggcaggcagcctgcgccaactcgattcg
cgcatcaccgccaaacgccgtctgcattttttcgcttacggcatcgcccgcatcgaaggc
ggcgcacgtttggaagagcacattcaggagctggcttatttgtccgaactcggtttcagc
ctgccgcacgggcaattcggcgttttcccgaatatcgccgaaatactggcattttacgaa
cacatgtcgcaaaaacgccccgaacttccgtatgaaatcgacggtatggtggtaaaagtg
aacagcttggcgcagcaggaaactttgggtttcgtttcccgcgcgccgcgctgggccatc
gcgcacaaattccccgccgaagaagccttaaccgtggttgaggcgattgatgtgcaggtc
ggccgcaccggtgccgttacccccgtcgcccgcttgcagccggtgtttgtcggcggcgtt
accgtaactaacgccacgctgcacaacgaaggcgaaacgcagcgcaaagacgtacgcatc
ggcgataccgtggtagtgcgccgcgcgggagacgtgattcccgaagtggtgcgcgtggtg
ttcgaacgccgcccgatgcaaaccattgccgaaactattgccgaaaccgtttcagacggc
ctgcaaaacgatttgtttgccgaacccgccgcaaccgccaccgagcagcccgtttatccc
caataccgcctgcccgaacactgcccgatctgcgccagcgaaatcgaacgcgaagaaggc
gaagccgtggcccgttgcagcggcggcatgttgtgccaagcccagcgcgcgcaagggctg
attcattttgcttcgcgtaaagcgatggacatcgaaggcttgggacaacgccaaatcgag
cagttggtcgcccaaaatctggtgcagcatttcgccgacctctaccgtttggacgtaccg
actttgcagttgatgaaagaaaacgccgataaagagcaggctgcggacaccggcggcaca
gtttcagacggcctcaaaacaacgtctaaaaaacagtcgccgaccaaatgggcggaaaac
attctcgctggtatcgcagccagcaagcagcccgaactcgcccgttttctgttcgccctc
ggcatccgccatgtcggcgagcgcacggccaaatcgctggctcaagccttcggcacgctg
gaaatcgtgcgccgtgcccccgaacccgtgctggcctgcctgcccgacatcggtgccatc
gttgcccgttccatcgcccatttcttcgcccaaccggagcagcaggccatgatagacgaa
ctgcttgccgtaggcgttgttccacaaaaccaaaccgttaccctgcccctttcccaatat
gttactccggccaaatggctcagccgcctgcccggtttcaaaatcagcgaaaccaaagcc
gccgccttgtgggatttggcgggcaaaaatacagacggcctattgaacgacaatgcgttg
aatgccgactggcagcaatggcgcaaccaacccgaaaatgcagcccttttattgtctatg
cggcagtttctggaacaaatgccgtctgaaaacgaagcatccgtttcagacggcctcaac
caagccgttgccggtaaaaccttcgtgtttaccggcactttgccgactctgaaacgcgac
gaagcacaagccatgattgaagcggcgggcgggaaagtgtccggcagcgtatcgaaaaaa
accgattatgtggtcgcgggcgaagcggcgggcagcaaactggaaaaagcccatgcgctg
ggggtggcggtgttggatgaagcgcagttgatgactttattggcttga
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