Ornithorhynchus anatinus (platypus): 100077368
Help
Entry
100077368 CDS
T01045
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oaa
Ornithorhynchus anatinus (platypus)
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oaa03036
]
100077368 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
oaa03400
]
100077368 (SMCHD1)
Chromosome and associated proteins [BR:
oaa03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100077368 (SMCHD1)
DNA repair and recombination proteins [BR:
oaa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100077368 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
ChuX_HutX
Motif
Other DBs
NCBI-GeneID:
100077368
NCBI-ProteinID:
XP_028922030
Ensembl:
ENSOANG00000002708
UniProt:
A0A6I8NZ00
LinkDB
All DBs
Position
5:complement(100728706..100859762)
Genome browser
AA seq
2019 aa
AA seq
DB search
MAAGPRRRTVFFFDRREERSEPGERALDLGDAADYRAFRRRVCQALGISPEEKFVITTTN
RKEITDDNFSDSVQDGITLYLLQSVNQLLLSATKERIDFLPHYDTLVKSGMYEYYASEGQ
NPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWA
VYRLSKFTRKGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPAD
SHDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSSHIGNDDERFLHGLILEEKEKNS
FTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEANISAKEVGPFNNIDME
IAMFEKGKVPKIINLREIKDDMQTLYINTAADSFEFKSHVEGEGVVEGVIRYHPFLYDKE
TYPDDPSFPSKLKDDDDDDECFILEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKK
RGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRVFNGQEQRMKIDR
EFALWLKDCHEKYDKQIKFTLFKGIITRSDLSSKRMQSPWATYSAIEWDGKTYKAGQLVK
TTKTLPLFYGSIVKFFLYGDHDGDVYATGGEVQIAMEPQALYDEIKTVPITKLDRSVAEK
AVKKYVEDEMARLPDRLSVTWPEGDELLPNEVKPAGTPIGALRIEILNKKGEAMQKLPGT
SHGGSKKLLVELKVILHSPSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVL
NESNADTYAGRPLPSKTLKFSVKEGKPEKFSVGLLDPPFRVGVPFNIPLDLQDEFGHTTQ
LMSEIKPILEASGLSLEYEEISKGPSCVIRGVTAKGHVNNYQGKNFNLKVILPGLKEDSQ
ILKIRLLPGPPRQLKVKPESDILVIENGTAFPFQVEVLDEAGNITAQPKLIVLCKFLGAP
NLPVYTVDCSNAGTSILTGPVVQVQNIKKDQTLKAKIEIPSCKEVTAVEKTFKLLPSSHV
ARLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGEREIIITAALAEKIKVNWT
PKINREHLLQGLLPDVKVPTSVKDVRYCQISFQDDHVSLESAFTVRPLPDEPKHLKCQLK
GGNTVQMGQELQGEIDVIITDQYGNQIQTLGSNCLTSLGVSGNGLNKSTLKVTWQESTQS
ISVKGIKFNPGPPGSKELCFAWREFSDFLRVQLISGPPVKLILVDWPELEPIPVINGKEL
PNPLIVQVCDYWENPTHEPHIKINLQKASTVKLSPSNQQHKTDENGRANLGVFSVCAPRG
EHSIQVKATYNKCTLEGPIIKLRVLPDPEKPVRLNVKYDRDASFPAGNVFTDFMVSVISE
DDSIIKNINSTRITMKMWKLPGSGNRPPANAETFSCSKIKDNDKEEGFFYFRDKVIPNKV
GTYSIQFGFMIDKTTSLSSDQIIIEVVPNEPTRLVPENLPATPAVSNVRAIASRTLVKDL
CLSIMDEHNNRTGTELVGKIVAKIKSSIEEDNETPLFQGKCKTVEFPFLKGMAEISNLVL
AENSPGKDSTEYFIVFEPQLPSLSRALEPYRLPFMFYDDFKKQQQMAALTKEKDQLSQSI
VMYRNLFDAGNQLVSEMKCQVQEARSKEVHLRNELKKQHIDIPSTNAVSHIDALVKQKTS
DLERLKKQPRRSCTLPNYPKGNPDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLST
DAARRIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKNYFRPLGNPVFARDLLTFP
ENIEHCQIVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQ
NKAPPMDKLRGMVFGAPLPELFQTLGAQIDLLQQYRLSMCKLGQANKDLDCQLQYLGSPD
MQKKKQELNEQEENLKLIEQKLGMTPTGKCPESVLQGTKLDMSDNPTPPKRMRRESSKKL
YSSEEWISSSVKKLKTQLQEAQSPEFNENSRKRKCKEAN
NT seq
6060 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggggccgcggaggcggacggttttcttcttcgaccgtcgggaggagcgttcg
gagccgggggagcgggccctcgacctgggagacgccgccgactaccgggccttccgccgc
cgcgtctgccaggcacttggcatctcacccgaagagaaatttgtcattacaacaacaaac
agaaaagaaattacagatgataacttcagtgacagtgtccaagatgggattaccttgtac
ctgctgcagtcggtcaatcaattgttactttccgcaacaaaggagcgaattgacttctta
ccacattatgacacgctggtcaagagtggcatgtatgaatattatgccagcgaaggacag
aacccgttgccatttgcccttgcagaattgattgacaactcgttgtccgctacgtctcgc
aacactggtattcggagcatccagatcaaactgcttttcgatgactcgcaaggcaaacct
gcagttgcagtgattgataatggaagaggaatgacctccaaacagctcaacaactgggcc
gtgtataggttgtcgaaatttacaagaaaaggtgactttgaaagtgaccactcggggtac
gttcgccctttgccagtgcctcgtagtttaaacagtgacatttcctattttggtgtcgga
gggaagcaggcggtcttcttcgttggacagtcagccagaatgatcagcaaacctgcagat
tcccatgatgttcacgagcttgtgctttcaaaggaagattttgagaaaaaagagaaaaat
aaagaatcaatatatagtggatatatcaggaacagaaagccttcggattcatctcatatt
ggaaatgacgatgagagatttctccatggtctgatcctagaggaaaaggaaaaaaatagc
ttcactgcagtagttattactggggtgcaaccagagcacatacagtacttgaagaattat
tttcatctttggacaagacagttggcacatatttatcattactacattcatggaccaaaa
ggaaatgaagccaacatttcggcaaaagaagttggaccattcaacaacattgatatggag
atcgccatgtttgaaaaggggaaggtaccgaagattatcaaccttagagaaatcaaagat
gacatgcagacgctgtatataaatacggcagcagatagctttgagttcaagtcccacgtg
gaaggagaaggtgtagtggaaggagtcatccgctaccatcctttcctctatgataaggag
acgtatcctgatgatcccagttttccatcgaaattaaaagatgatgatgatgacgacgaa
tgctttatactagagaaaggagccagagggaaaagaccaatttttgaatgtttttggaat
ggaagattgataccttacacaactgtggaagactttgactggtgtgcgcctccgaagaag
agagggctcgccccaattgaatgctacaatagaatctctggggcgctattcactaatgac
aaatttcaagtcagcacaaacaaactgacttttatggatctggaattaaagctgaaagac
aaaaacaccctttttacaagagtttttaatggacaggagcagcgaatgaaaatcgaccga
gaatttgctttgtggttgaaagactgtcacgagaagtatgataaacaaataaaatttaca
ctttttaaaggaataattactcgtagcgatctttcttcaaaaagaatgcaaagtccttgg
gcaacgtactccgcgatagagtgggatggaaagacatacaaagcaggacagttggtgaaa
accaccaagacacttcctttattttatggaagcatagtgaagttttttctttacggcgat
catgacggagacgtatacgccacgggaggagaagttcaaattgcaatggaacctcaggcg
ctgtacgatgaaataaaaaccgtcccaatcacaaagctggacagatcggtggctgaaaaa
gctgtaaaaaaatacgtagaggatgaaatggcaaggcttcctgatcgactgtcagtaacc
tggcccgaaggagatgaattattaccgaatgaagtgaagcctgcagggactccaattggt
gctttaagaattgaaatactgaataagaaaggggaggcaatgcaaaagctccccggtaca
agtcatggcggctcaaagaaacttttggttgagctcaaggttattttgcattctccgagt
gggaataaagaaatcatttcacacatcagtcagcatgggggtaaatggccttattggttt
aaaaaaatggaaaacattcaaaaactggggaactacacattaaaattgcaagtggttttg
aatgaaagtaatgcagacacttatgcaggaaggccactgccctctaaaacattaaaattt
tctgtcaaagaggggaaacccgagaaattttctgtgggtcttctggatcctccatttcgt
gttggagtgccattcaacattcctttggacttgcaggatgaatttggtcatactactcag
ctgatgagtgagatcaagccaattcttgaagcaagcggtttgtcattggaatatgaagaa
ataagtaaaggaccaagttgtgtaattaggggtgttaccgctaagggccatgtaaacaat
taccagggcaagaattttaatctgaaggttatactaccaggtttaaaagaagactctcag
attttgaaaattcgattactacctgggcctcctcggcagctgaaagtgaaacccgaatct
gacattttagtcattgaaaatggaacagcctttccattccaggtggaagtgttagatgaa
gcgggaaatatcacagcccaaccaaagttgattgtactctgtaagttcctaggcgctcca
aaccttccagtgtacactgtggattgcagcaatgctgggaccagtattttaactgggccc
gtagtgcaagtacagaatataaagaaagaccagacactcaaagcaaagattgaaatacct
agctgtaaagaggtaacagctgtggagaagacttttaaattgcttcccagcagccacgtt
gccagattgcaaatcttcagcgtggaaggacaaaaggctattcaaattaaacaccaagac
gagatcaactggatcgccggagacgtcatgcataatctcatttttcagatgtatgatgaa
ggggagagggaaatcatcataactgcagctctggcagagaaaatcaaagttaactggaca
cctaaaattaacagagagcacttgcttcagggtttattaccagacgtaaaagtgccgacg
tctgtgaaagatgtgcggtattgccagatatcattccaggatgatcatgtctctctggag
agcgcatttacagtaagaccacttcccgatgaacctaaacatcttaaatgccagttaaaa
ggaggaaatacagtacaaatgggacaagaactgcagggagaaattgacgtaatcattaca
gaccaatatggaaatcagattcagacattaggttcaaattgtttaacttctttgggtgtt
tctgggaatggattaaataaatctacattgaaagtgacctggcaggaaagtacacaaagc
ataagtgtaaaaggcataaaatttaatccaggacctcccggaagcaaggaattgtgtttt
gcgtggcgtgaattttctgattttcttcgggtgcagttaatttctggacctccagttaaa
cttattctggtggattggcctgaattagagcccattccggtgatcaatggaaaagagttg
ccaaaccctcttatagttcaggtctgcgattattgggaaaatccaactcacgaaccacat
attaaaataaatcttcagaaagctagcactgtaaagctcagcccttcaaaccagcagcat
aaaacagatgaaaatggaagggccaatttgggagtttttagtgtttgtgcccctagggga
gagcatagtatacaggtcaaggccacttataacaagtgtacacttgaagggccgataatt
aaactgagagttcttccagatcctgagaaacctgtgcgtttgaatgttaaatatgataga
gatgcttctttcccagccggaaatgtcttcactgactttatggttagtgtcatttctgaa
gatgacagcatcataaaaaatattaattcaacccggatcactatgaaaatgtggaaacta
ccagggagtgggaaccgaccgccagcaaacgcagaaacttttagttgtagtaaaataaag
gataatgacaaggaagaaggcttcttctacttcagggataaagtgatcccaaacaaagtg
gggacttacagcatccagtttggatttatgattgataaaacgacttctctcagcagtgac
cagattataattgaagttgtacctaatgaaccaaccagactggtcccagaaaatctacca
gcgactcctgcggtttcaaacgtccgagctattgccagtagaaccttagtcaaggatttg
tgcctcagcattatggatgaacacaacaaccgaactgggaccgaattggttggcaagata
gtagctaaaattaaaagttccattgaagaagataacgaaaccccattgtttcaagggaaa
tgtaaaacagttgaattcccatttctcaaagggatggctgaaatttcaaacctagtgttg
gccgaaaacagtcctggaaaggatagtactgagtattttattgtttttgagcctcaactg
ccaagtttatcgagagcgttggaaccgtatcggctgccgttcatgttttacgatgatttt
aagaagcagcagcagatggcagcactcaccaaggagaaggatcaactgtcgcagtccatt
gttatgtacagaaatctcttcgatgccgggaatcagctcgtcagtgagatgaaatgtcaa
gttcaagaagcaagatcaaaagaagtccacctgaggaatgaactgaagaaacaacacatt
gatattccatcaacaaatgcggtttcacacattgatgcacttgtaaaacaaaagacttca
gacctggaaagattaaagaaacaacctcgaagatcatgcacgcttccaaactatcccaaa
ggcaatccagatattttgggaaagatagcacatttagcccagattgaagacaatgaagcc
gcaaaggttatttcttggcatttggcaagtgacatggattgcgtagtcaccctctctacc
gatgctgctcggcgcatctttgacgagacccaaggacgtcagcaggtgttgcctctcgac
tcgatctataaaaagacacttccagactggaacaggcctctacctcatttacgcaatgga
aaaaattactttagacctcttggaaatcctgtatttgccagagatttattaacatttcct
gagaatatagagcattgtcagatagtgtttgggatgctattaggagacaccatcattctg
gacaacttggatgccgctaatcattaccgaaaagaggtagtaaaaattacccactgccct
acactgctgaccagggaaggcgatcgaattcgaagcaatggaaaattcgggggcctccag
aataaagcccctccgatggacaaacttcggggaatggtttttggagcaccactgccagaa
cttttccagacactcggagcacaaatagatctccttcagcagtatcgtttgtccatgtgt
aaactcggtcaagcaaataaggaccttgattgtcagctgcagtatttgggctccccagat
atgcaaaagaaaaagcaagaacttaatgagcaggaggaaaatctgaagctaatagaacaa
aaactgggtatgacgccaacagggaagtgtcccgagtcagtccttcagggaaccaaactc
gatatgtcagacaatccaacccctcctaaaagaatgagaagagagtcctcaaaaaaacta
tatagttccgaagagtggatttcatcttccgtgaaaaagctgaagacgcaactgcaagaa
gcccagtcgccagaatttaatgaaaactcaagaaagagaaagtgtaaagaagccaattag
DBGET
integrated database retrieval system
