Ornithorhynchus anatinus (platypus): 100078687
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Entry
100078687 CDS
T01045
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
oaa
Ornithorhynchus anatinus (platypus)
Pathway
oaa03015
mRNA surveillance pathway
oaa05014
Amyotrophic lateral sclerosis
oaa05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
oaa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100078687
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100078687
05022 Pathways of neurodegeneration - multiple diseases
100078687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oaa03019
]
100078687
Messenger RNA biogenesis [BR:
oaa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
100078687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RL
RRM_5
Motif
Other DBs
NCBI-GeneID:
100078687
NCBI-ProteinID:
XP_001515396
Ensembl:
ENSOANG00000013320
UniProt:
F7EDX1
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Position
5:complement(67352243..67369662)
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AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSTSNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtacattcgggttacagaagatgagaacgacgagcccattgagatcccatcc
gaggatgatggcaccgtgctcctctccaccgttacggcccagttccccggggcgtgtgga
ctgcgctacaggaatccagtgtctcagtgtatgagaggcgtccggctagttgaagggata
ctgcacgcccctgatgccggctgggggaatctggtgtatgttgtcaactatcccaaagat
aacaagaggaaaatggatgaaacagatgcctcgtctgcagttaaagtgaaaagggcagta
cagaagacatctgatttgatagtcctaggtcttccctggaaaacaacggaacaggaccta
aaagaatattttagtacttttggagaagttctcatggtgcaggtcaagaaagacattaaa
accggccattcaaagggatttggttttgttcgctttacggagtatgaaacacaggtcaaa
gtgatgtcacaacgacacatgatagatggacgatggtgtgactgtaaacttcctaattct
aagcaaagtccagatgagcctttgagaagcagaaaggtgtttgttgggcgttgtacagaa
gatatgaccgcagatgagttgcgccagtttttttgccagtatggagaagtggtagatgtc
ttcatccccaaacctttcagggcttttgcctttgttacatttgcagatgatcaggttgcg
cagtctctttgtggcgaggacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcacaatagcaatagacagttagaaaggagcggaagattcggtggcaatccg
ggcggttttgggaaccaggggggctttggaaacagtcggggagggggagccgggttggga
aacaatcagggcagtaacatgggtggggggatgaacttcggggcttttagcatcaaccct
gccatgatggccgcagcccaggctgcgctgcagagcagctgggggatgatgggcatgcta
gctagtcagcagaaccagtcgggcccgtcagggaacaaccagagccaaggcaacatgcag
agggagccgaaccaagcattcgggtcgggaaacaactcgtacagtgggtctaactccggc
gccgcgatcggctgggggtccacgtcaaacgcagggtcgggcagtggctttaatggaggc
tttggctcaagtatggattccaagtcctcgggctgggggatgtag
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