Oleispira antarctica: OLEAN_C23000
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Entry
OLEAN_C23000 CDS
T04028
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oai
Oleispira antarctica
Pathway
oai03030
DNA replication
oai03410
Base excision repair
oai03420
Nucleotide excision repair
oai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OLEAN_C23000 (ligA)
03410 Base excision repair
OLEAN_C23000 (ligA)
03420 Nucleotide excision repair
OLEAN_C23000 (ligA)
03430 Mismatch repair
OLEAN_C23000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oai03032
]
OLEAN_C23000 (ligA)
03400 DNA repair and recombination proteins [BR:
oai03400
]
OLEAN_C23000 (ligA)
Enzymes [BR:
oai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OLEAN_C23000 (ligA)
DNA replication proteins [BR:
oai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OLEAN_C23000 (ligA)
DNA repair and recombination proteins [BR:
oai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OLEAN_C23000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OLEAN_C23000 (ligA)
MMR (mismatch excision repair)
DNA ligase
OLEAN_C23000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OLEAN_C23000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CCK76476
UniProt:
R4YN94
LinkDB
All DBs
Position
complement(2521591..2523660)
Genome browser
AA seq
689 aa
AA seq
DB search
MTITAEVTKRIQQLRKQLNTYSHQYYVLDEPSVPDVEYDRLYRELEAIEGEYPESISADS
PTQKVGAPPLASFSQVTHERPMLSLDNAMNENELIDFERKVKDRLKGNLDRAAVLEYACE
PKLDGLAVSILYEGGQLVQAATRGDGSTGENITLNVRTINNVPLSLRGTDFPQRLEVRGE
IYIPKAGFEKLNQDARENEGKVFANPRNAAAGSLRQLDSRITAKRPLEFCAYSIGVVSEN
FVLPNKHEEILQRLKYWGLKINSDMAVVQGIQSCVEYFAEMGRKRDGLDYDIDGIVFKIN
DLDIQEQLGFVARAPRWAIAAKFPAQEEMTLLEGVDFQVGRTGALTPVARLKPVHVAGVM
VSNATLHNMDEIARLGVKIGDTVIIRRAGDVIPQVVSVVLDRRPEGVSSLADIVMPTHCP
VCDSHVEKIAGEAVARCSGGLFCGAQRKEAIKHFSSRKALDVDGLGDKLVEQLVDANLIT
SFDDLFHLNLDDVASLDRMAKKSAQNLLDSLEAAKTTTLGRFLYSLGIREVGVTTAQNLA
DYFGFLERIQQADEATLLAVPDVGGIVAKHILSFFGEEHNQIIIEQLQKVGVNWLESEPV
SAAENAALPLAGKVYVITGTLNEMGRDDAKHHLQALGGKVTGSVSAKTDCLVAGEKAGSK
LTKAQGLNIDILDEAGFIQLLRDCGVQGV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgacgattaccgctgaagtaacaaagcgtattcaacagctaagaaagcaactcaatact
tatagtcatcaatattacgtattggatgaaccttctgttcctgatgttgaatatgatcgt
ttataccgagagctggaagccattgaaggtgaatatcctgaaagtattagcgcagattcg
ccgacacaaaaagtaggcgcccctccgttagccagtttttcgcaagttactcatgagcgc
ccaatgctgtctcttgataatgcgatgaatgaaaatgagttgatcgattttgagcgcaag
gtaaaagatcgcctaaaaggtaatttagatcgagcagctgtattagagtatgcctgcgag
ccgaaactggatggtctggccgtaagcattctttatgaaggcggtcagctggtccaagcg
gcgactcgtggtgatggctcgacaggtgaaaacatcactttaaatgtacgcaccattaac
aacgtccctctttcattacgcggcactgattttcctcagcgcttagaagtgcgtggtgaa
atctatataccgaaagccggttttgaaaagctcaatcaagatgcgcgtgagaatgagggc
aaagttttcgctaacccgcgcaatgcagctgcgggttcattacgccaattagattctcgt
atcactgcaaaacgcccattagagttctgtgcgtacagtattggtgtggtgtcagaaaat
tttgttttaccgaataagcacgaagaaatcttacagcgtctgaaatactggggacttaag
atcaacagtgatatggcggtggtgcaaggtattcaatcctgtgtggaatactttgctgaa
atgggtcgtaagcgtgatggtttagattacgatattgatggtatcgtttttaaaattaac
gatcttgatatacaagagcagctgggttttgtggccagagctccacgttgggcgatagcg
gctaaatttccggctcaagaagaaatgaccttattagaaggcgttgattttcaagtaggt
cgtacaggcgcattaacccccgttgcccgcttaaagcccgtgcatgttgcgggtgttatg
gtgagtaacgccacgttgcataatatggatgagatcgctcgcttaggcgtaaaaataggt
gatacggttattattcgccgtgcaggagatgttattccgcaagtggtatcggtggtatta
gatcgccgccctgagggagtgagcagcctcgctgatattgttatgccaactcattgccct
gtctgtgattcacacgttgaaaaaattgcgggtgaagctgttgcgcgttgtagtggtggt
ttattttgtggtgcgcagcgtaaagaagcaatcaagcacttctcttctcgaaaggctctc
gatgttgatggtttaggagataagttggtcgagcagttggtcgatgcaaatttaattaca
tccttcgatgatttatttcatttaaatctagacgacgttgccagcttagatcgtatggct
aagaagtcggcgcaaaatctattggattctttagaggctgctaaaaccacaacgttaggc
cgctttctttattcattgggtatacgcgaagttggtgtgacgactgcgcaaaatttagct
gattatttcggttttttagaacgtattcagcaagccgatgaagccacactattagccgtt
cctgatgtgggtggaatcgttgctaagcacatcttgtctttctttggtgaagaacataat
caaataattattgagcaattgcagaaggtaggtgtaaattggctagaatctgagccagtt
tctgctgctgaaaatgcagcgttaccgctggcgggtaaggtgtatgtgattactggcaca
ttaaatgagatggggcgggatgatgccaagcaccatttacaagccctgggtggtaaagta
acgggcagtgtctcagcgaaaacagattgcttggtggcgggtgagaaagctggatcaaag
ttgaccaaggcacaaggtttgaatattgatattttagatgaagcaggctttatacaacta
ttacgtgattgtggcgtgcaaggtgtttaa
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