Oxalobacter aliiformigenes: NB647_08995
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Entry
NB647_08995 CDS
T08749
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oal
Oxalobacter aliiformigenes
Pathway
oal03030
DNA replication
oal03410
Base excision repair
oal03420
Nucleotide excision repair
oal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NB647_08995 (ligA)
03410 Base excision repair
NB647_08995 (ligA)
03420 Nucleotide excision repair
NB647_08995 (ligA)
03430 Mismatch repair
NB647_08995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oal03032
]
NB647_08995 (ligA)
03400 DNA repair and recombination proteins [BR:
oal03400
]
NB647_08995 (ligA)
Enzymes [BR:
oal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NB647_08995 (ligA)
DNA replication proteins [BR:
oal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NB647_08995 (ligA)
DNA repair and recombination proteins [BR:
oal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NB647_08995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NB647_08995 (ligA)
MMR (mismatch excision repair)
DNA ligase
NB647_08995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NB647_08995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
WAV89000
LinkDB
All DBs
Position
complement(1966106..1968163)
Genome browser
AA seq
685 aa
AA seq
DB search
MQTDLFGTDESRGDLKERAKRLRDEIERYNYAYYVQDAPVVPDSEYDRLFAELQELEAAH
PELVSEDSPTQRVGGAPLAQFEKVEHKVPMLSLQNGLSEEDVEAFDQRISEELGGIKVDY
EAELKFDGLAVSLRYEKGLLVQAATRGDGTFGENITANVRTIHSIPLRLSDLAPPEVLEI
RGEVLMFKKDFHDLNKRQRENGQKEFVNPRNAAAGSLRQLDSQITASRRLRFFAYGLGEL
IGVSLPSTQGQLLEWFVKMGIPVCEERKVVHGLKGLMGFFHDIETRRDTLPYEIDGVVYK
VNQLSGQQKLGFISRAPRFALAHKFPAQEVLTEVTGIDVQVGRTGAITPVARLKPVFVAG
VTVTNATLHNEDEVRRKDVRIGDTVIVRRAGDVIPEVIASVSERRPADAREFVMPTHCPV
CGSPIVRPEDEAVARCSGGWINCPAQKKGGLQLFASRKAMNIEGLGEQLIDQLVDKKIIS
DAADLYRLDLETLSGLDRMADKSASNLLNELEKSRQTTFARFLYALGIRHVGEATARSLA
EHFGNLKDLKQASEDQLLDIDDIGPIVASSIKQFFDDPCNCELIAKLQNCGVHWPERAMT
AKSGILPLQNKKFVLTGTLSSLTRDEATEIIRNQGGKVSSSVSKNTDYVLAGSEPGTKLV
KAQELGIRILDENEFMQLVKNDENN
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcagacagacttgtttggcacagatgaaagtcgtggcgatctgaaagaacgggcaaaa
agattgcgcgatgagatagagcgttacaactatgcctattatgttcaggatgcacctgtc
gtgcccgattcggagtatgacaggttgtttgcggaattgcaggaactcgaggcagcgcat
cctgagcttgtcagtgaggattctccaacccagcgggtaggaggggctccgcttgcacag
tttgagaaagtcgagcataaagttcccatgttgtctttgcagaacgggctgtccgaggaa
gacgtggaagcattcgaccagcgaatcagtgaagagctgggtggtatcaaagtggactac
gaagccgaactgaagtttgatggtctggctgtcagcctgcgttatgaaaaaggactgctt
gtccaggctgcgacacggggagacgggacctttggggaaaacatcacggcaaatgtcagg
acaatccattccattccgcttcggttatccgatctggcacctcctgaagtgctggaaatc
agaggagaggtgctgatgttcaaaaaggattttcacgatttgaacaaacgtcagcgcgaa
aatgggcagaaagagtttgtcaacccacgcaatgcagcggcaggcagcctgcgtcaactg
gattcacaaatcacggcgtcacggcgattgcggtttttcgcttatggcctgggagaattg
attggcgtgtctttgccttcgacacagggccagttgctcgaatggttcgtgaaaatggga
attccggtatgcgaggaaaggaaagtcgtccacgggttaaagggattgatgggatttttc
catgatatcgaaacacgtcgtgatacattgccgtatgaaatagatggtgtcgtctacaaa
gtcaatcaattgtccggacagcaaaagctcggatttatttccagagcgccccgcttcgct
cttgcgcacaaatttcctgctcaggaagtgctgacagaagtcaccggcattgatgtacag
gtcggtcgtaccggagcgattacaccggttgcgcggctgaaacctgtttttgtggccggc
gttaccgttaccaatgcgacgcttcataatgaagatgaagttcgccgaaaagatgtcagg
atcggtgataccgtgattgtcaggagagcgggagatgtcattccggaagtgattgcttcc
gtatccgagaggaggccggctgacgcgcgggaatttgtcatgccgacacactgccctgtt
tgcggatcacctatcgttcggcctgaagatgaagctgtcgcacggtgttctggcgggtgg
atcaactgtccggcacagaaaaagggaggattgcagttgttcgcttcccgcaaggccatg
aatatagaaggtttgggagaacaactgatcgaccagctggtggacaagaaaatcatcagc
gatgcagccgatttgtaccgtcttgatcttgagacattgtctggactggaccggatggcg
gacaaatcggcgagcaatttgttaaatgaactggaaaaatcccgccagacgacttttgcg
cggtttctgtacgcactgggaatacgccatgtcggtgaagcaacagcccgttctctggcc
gagcatttcggcaatctgaaagatctgaagcaggccagtgaggatcagttgcttgatatt
gacgatatcgggccgattgtcgcgtcctcaatcaaacagttctttgatgatccttgtaat
tgtgaactgattgcaaaattgcagaattgtggtgttcactggcccgagagagccatgacg
gcaaaatccgggatattgccgttacagaacaaaaaatttgtattgactggaacgctttcg
tcattgacccgggatgaggccactgaaataatcagaaaccagggaggaaaagtcagcagt
tctgtttccaaaaacacggattatgttctggcaggaagcgaacccggtaccaaactggtg
aaagcgcaggaattgggaattcgtatcttagatgagaatgaatttatgcaattggtaaaa
aatgacgaaaataactaa
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