Olleya aquimaris: DZC78_00065
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Entry
DZC78_00065 CDS
T05582
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oaq
Olleya aquimaris
Pathway
oaq03030
DNA replication
oaq03410
Base excision repair
oaq03420
Nucleotide excision repair
oaq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DZC78_00065 (ligA)
03410 Base excision repair
DZC78_00065 (ligA)
03420 Nucleotide excision repair
DZC78_00065 (ligA)
03430 Mismatch repair
DZC78_00065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oaq03032
]
DZC78_00065 (ligA)
03400 DNA repair and recombination proteins [BR:
oaq03400
]
DZC78_00065 (ligA)
Enzymes [BR:
oaq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DZC78_00065 (ligA)
DNA replication proteins [BR:
oaq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DZC78_00065 (ligA)
DNA repair and recombination proteins [BR:
oaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DZC78_00065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DZC78_00065 (ligA)
MMR (mismatch excision repair)
DNA ligase
DZC78_00065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DZC78_00065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXO78848
LinkDB
All DBs
Position
12037..14034
Genome browser
AA seq
665 aa
AA seq
DB search
MSIQLKINALREQLREHNYNYYVLDSPTISDYDFDIQLKELQALEEAHPEFFDATSPTLR
VGGAVTKNFNTVVHKHRMYSLDNSYSLEDLKDWETRIKKMVDGPVEYVCELKYDGASINL
TYQNGTLFNAVTRGDGIQGDDVTANIKTINSVPLQLKGEDVPEQFEIRGEIVLPFDGFNA
MNEIRIANGEEPYKNPRNTASGSLKLQDSAEVAKRPLDCLLYGLVGGAFDYKTHFQSLDK
ARQMGFKVPNEAKLCQNIDQVFEFINHWDVARHDLPYETDGVVVKVNNLHQQDELGFTSK
APRWAMAYKFKAEQVSTVLNSISYQVGRTGAITPVANLEPVELAGTVVKRASLHNADQIE
KLDIRKGDTVFVEKGGEIIPKIIAVNLTERPEHSMPTKYITECPECHTPLQREVGEAKHF
CPNYNGCNPQIIGRIQHFISRKAMDIDGLGGETVALLVNAGLIKNYADLYELTKAQVLPL
ERMAEKSADNLIAGIEASKQIPFERVLFALGIRFVGETVAKTLVKHYKTIDALAFASVLD
LEQVNEIGIRIAESVVDFFADPENQDMISRLKSYGLQLEISAEKLAGQTDKLKGQVIVVS
GVFHSVSRTELKKLIEDNGGKVSSSISSKTSYIVAGDNMGPSKKEKAEKLKVELISEQDF
LQKIQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagcatacaattaaaaataaacgcattaagagaacagttaagagaacataattataat
tattatgttttagacagtccaactattagcgattatgattttgatatacaattaaaagaa
ttacaagctttagaagaggctcatccagagttttttgacgctacatcaccaacgttacgt
gttggaggtgctgttacaaaaaattttaatacagtggtgcataagcacaggatgtatagt
ttagataattcttattctttagaagatttaaaagattgggaaacacgtattaaaaaaatg
gtggatggtccagttgaatatgtttgcgagctaaaatatgatggagcgtctattaactta
acttatcaaaatggaaccttgtttaatgcggtaacacgtggagatgggattcaaggtgat
gatgttacagcaaatataaaaaccattaattctgtgcctttacaattaaaaggagaagat
gtgccagagcaatttgaaattagaggagaaatagtattgccttttgatgggtttaatgct
atgaatgaaatacgaattgctaatggagaagaaccttataaaaacccacgtaatacagca
tctggtagtttaaaactacaagatagtgctgaggttgcaaaacgacctttagattgttta
ttatatggtttagttggtggagcttttgattataaaacgcattttcaaagcttagataaa
gctcgtcaaatggggtttaaagtgcctaatgaagctaaattgtgtcaaaatattgatcaa
gtttttgagtttattaatcattgggatgttgctagacacgatttaccgtatgagactgat
ggagtagtggtcaaggttaataatttacaccagcaagatgagcttggttttacatccaaa
gcaccacgatgggctatggcatataagtttaaagcagagcaggttagtactgttttaaat
agcatttcctatcaagttggtcgtacaggtgcaattacacctgtcgctaatttagaacct
gttgaacttgcaggaacagtggtaaaacgtgcttcgttacataatgcagatcaaattgaa
aaattagatattagaaaaggtgatacggtttttgtagaaaaaggtggagaaattatacca
aaaattattgctgttaatttaacagaaagaccagaacattcaatgccaactaaatatatt
acagaatgtccagagtgtcatacacctttacaaagagaagttggagaagcgaaacatttc
tgtccaaattataatggttgtaatcctcaaatcattggacgtattcagcattttatttct
agaaaagcaatggatattgatggcttaggtggagagaccgttgcgcttttagttaatgca
ggattaattaaaaattatgcagatttatacgagttaaccaaagcacaagttttacctcta
gaacgcatggcagagaaaagtgctgacaatttaattgcaggtattgaagcttcaaagcaa
ataccatttgaacgtgttttatttgctttaggtattaggtttgttggtgaaactgttgca
aaaacattagttaaacattataaaacgattgatgcattggcttttgcttcggttttagat
ttagaacaagttaacgagattggtattagaatagccgaaagtgttgttgacttttttgct
gatccagaaaaccaagacatgattagtagattaaaatcttatggtttacaattagagatt
tcggctgaaaaattagcaggtcaaaccgacaaattaaaaggacaagttatagtagtttcg
ggtgtatttcattcggtatcaagaactgagcttaaaaaactgatagaagataatggtgga
aaggtaagtagttcaatttcatctaaaactagttatattgtagctggagataatatggga
ccaagcaaaaaagagaaagcagagaagctgaaagtagaattaatttctgagcaggatttc
ttacaaaaaattcagtag
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