Ovis aries (sheep): 101122749
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Entry
101122749 CDS
T03117
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oas
Ovis aries (sheep)
Brite
KEGG Orthology (KO) [BR:
oas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oas03036
]
101122749 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
oas03400
]
101122749 (SMCHD1)
Chromosome and associated proteins [BR:
oas03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101122749 (SMCHD1)
DNA repair and recombination proteins [BR:
oas03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101122749 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
101122749
NCBI-ProteinID:
XP_027816735
LinkDB
All DBs
Position
23:37422342..37546562
Genome browser
AA seq
1997 aa
AA seq
DB search
MAAAGGGGPSVETGEGGGGDGPRTVYLFDRREKESELGERALQVEERSDFAAFRASVCQT
LGISPGDKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNNGVRSIQIKLHFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGFIRNRKPSDSSHITNDDE
RFLHHLITEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGNEQR
TSKDAGPFNNIDIEISMFEKGKTPKIINLREIQDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPFECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRSDLPSKKQGPWATYSAIE
WDGKIYKTGQLVKTVKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGETMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIH
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNI
PVEFQDEFGHTSQLSTDIQPVFEASGLALHYEEITKGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDSQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLIVHCKFSGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVITVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSINVRGVRFIPGPPGNKDLCFTWREFSDFIRVQLVSGPPAKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKANNLKLTPSNQQHKTDERG
RANFGVLSVFAPRGEHIMQVKAIYNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWKLANSGNRPPANAEIFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFTMDKANILNSEQIIVDVLPNQPVKLVPEIQPATPAVS
NVRSVASRTLVKDLYLHITDDYNNHTGVDLVGTVMATIKGSNEEDDIPLFNGKIRTLEFP
FVKGSAEITSLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSITVYRTLFDTSKQLLDEMKCQVEEAKLKEAQLRNELKNHNIDISSTQQ
MPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWH
LASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPI
GDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRTAVCRLGSVNE
DLNGQLKYLHTPDMKRKKQELDEHEKNLKLIEQKLGMTPTRKCNDSLPHPVTDCPIPPKR
IRREAARQNRIITKTDV
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggagaccggagagggtggcggaggcgac
ggccccaggacggtgtacttgtttgaccgacgcgagaaggagtcggagctcggggagcgg
gcgctgcaggtcgaggagcgctcggacttcgcggcgttccgcgcctccgtgtgtcagaca
cttggtatttcacctggagataaatttgtcattacaacaacaagtaggaaagaaattacc
tgtgataactttgatgaaactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ttggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttaccattt
gctcttgcagaattaattgacaattcattgtctgctacttctcgtaacaatggtgttaga
agcatacagatcaaattgcattttgatgaaacacaaggaaaacctgccgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgaccactgcca
gtacctcgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacagtcagccagaatgataagtaagcctgcagactcccaggatgttcat
gaacttttactttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agcggatttattagaaacagaaagccgtctgattctagtcacattacaaatgatgatgaa
agatttctacatcatcttatcacagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggggtacaaccagaacacatacagtacttgaaaaattatttccatctttggacc
agacagttaacgcatatttatcattattacatccatggtccaaaagggaatgaacaacgt
acatcaaaggatgctggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaagacacctaagattatcaacctgagggaaatacaagatgacatgcagacattgtat
ataaatacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattatccgatatcaccctttcttatatgatagagaaacctaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgacgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatgggcggctgataccatat
acatctgttgaagactttgactggtgtactcctcctaagaagagagggcttgctcctttt
gagtgctacaataggatatctggtgcattattcactaatgacaaattccaggtcagcaca
aacaaactgacctttatggatcttgagctaaaactgaaagacaagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaattgacagagagtttgctttatggctg
aaggactgccatgaaaagtatgacaaacaaataaaattcaccctttttaaaggagtaatt
acacgttctgatcttccttctaaaaagcagggcccctgggccacttattcagcaatagaa
tgggatggaaaaatatacaaaacaggacagctggtcaagacagtcaagacacttcctctc
ttttatggaagcattgtgaaattttttctctatggtgatcatgatggagaagtatatgct
acaggaggagaggttcaaattgcaatggaacctcaggcactatatgatgaaataaaaact
gtgccaattgcaaagctggataggacagttgctgagaaagctgtgaaaaaatacgtagaa
gatgaaatggcaagactccctgatagactgtcagtgacttggcctgaaggagatgaatta
ttgccaaatgagatcagacctgctggaacccccattggtgcattaagaattgaaatatta
aataaaaaaggggaaacgatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacactcttcaagtggaaataaagaaatcatttca
catattagtcaacatggagggaaatggccttactggtttaaaaaaatggaaaatattcac
aagttggggaattatacattgaaattgcaagttgtcctgaatgaaagtaatgcagacact
tacgcaggaaggccactaccatctaaagcaattaaattttctgttaaagagggtaaacca
gagaaattttcgtttggtcttttggatcctccttttcgtgttggagtcccattcaatatc
cctgtggagtttcaggatgaatttggtcatactagtcaactctctactgatattcagcca
gtttttgaagcaagtggtttagctttacattatgaagaaataaccaaaggaccaaattgt
gtcattcgaggtgttacagctaagggccctgtaaactcttgtcaaggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagactcacagattttaaaaattagattactc
ccaggtcctcctcgtcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacagcacaa
ccaaagttgattgttcattgtaagttttcaggtgctccaaaccttccaatctatgttgtg
gattgcagtagttctggaaccagtattttatcaggaccagcaattcaagttcagaatatt
aaaaaagaccagacacttaaagcaaaaattgaaatacctagttgtaaagatgtagcacca
gtggagaagactattaagttgctccccagtagccacgttgccagattacagatattcagt
gtggaaggacagaaggccatccagatcaaacatcaggatgaggttaactggatagcagga
gatgtaatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttggcagagaaaattaaagttaattggactcctgagattaacaaagagcac
ttgctgcagggtctgcttcctgatgtgcaagtgccgacatctgtgaaagatatgcgctat
tgccaggtttcgttccaagacgaccatgtgtctttggaaagtgcatttacagtaagacca
cttccagatgaacctaaacatctaaaatgtgaattaaaaggaggaaaaacggtacagatg
ggtcaggagcttcaaggagaaatagttataactgttacagatcagtatgggaatcagatt
caagcattttcaccaagttctctgtctgcattgggaattgctgggattggacttgatagc
tcacatttgaaaactacttttcaggaaaatacacaaagtataaatgtgagaggcgtcaga
tttattccaggtccccctggaaataaggatctttgctttacttggcgtgaattttctgac
tttattcgagtgcagctagtttctgggccaccagctaaacttctcctcgtagactggcca
gagttaaaggagtccattccagtgattaatggaagagaattgcagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtgccacaggttaaaataagtcttgta
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaactgacgaaaggggc
agggctaattttggagtgctcagtgtttttgcccctagaggagaacatattatgcaggtt
aaagccatttataacaagaataccatagaaggacccataattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaggatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaaattggcaaacagtgggaaccga
ccgccagcaaatgcagaaatatttagttgtaataaaataaaggataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaggtggggacatactgtatccag
tttggttttacgatggataaagcaaatattcttaacagtgagcagattatagtggatgtt
ctacctaatcagcctgtgaagttagttcctgaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccctggtcaaagatttgtatcttcatatcacggat
gactacaacaatcatactggagttgatttggttggcactgtaatggctaccatcaaaggt
tctaatgaggaagatgacatacctctctttaatgggaaaattagaacacttgaatttccc
tttgtgaaaggttcagctgaaatcacgagtctagtgctagcagaaaatagtcctggaagg
gatagtactgagtattttattgtgtttgagcctcggctgccagctttatcaagaacgtta
gaatcatatattctaccatttatgttttacaatgatgttaagaagcagcaacaaatggca
gcgcttacaaaagaaaaggaccaattatccaagtctattacagtgtacagaactttattt
gataccagcaaacagcttcttgatgagatgaagtgccaagttgaagaagcaaaattaaaa
gaggcccagttgcgaaatgaactgaaaaaccacaatattgacatttcttcaacacagcag
atgccacacattgaagcacttttgaaaagaaagctatcagaacaggaagaactaaagaaa
aaacccagaagatcatgtactcttccaaattatactaaaggcagtggagatgttttggga
aagattgcacacctggcacagattgaagatgatagagccgccatggttatctcttggcat
ctggcaagtgacatggactgtgtggtcaccctgaccactgatgctgcacggcgaatttat
gatgaaacccaaggtcgtcagcaggtgttgcccctcgattctatttataagaagactctt
ccagattggaaaagacctctacctcattaccgaaatggaaaattgtattttaaacccatt
ggagaccccgtctttgcccgagacttgttgacttttccagataacgtagaacactgtgaa
acagtatttggtatgctgttaggagacactattattttggataatttggatgctgccaat
cattacagaaaagaggttgttaaaattacacactgtcctacactgctgaccagagatgga
gatcgcattcgaagtaatgggaagtttgggggccttcagaataaagctcctccaatggat
aaactccggggaatggtgtttggagctccagtaccaaaacagtgcctgatcttaggggag
caaatagatcttctccagcagtaccgcactgctgtgtgcaggttgggcagtgtgaacgag
gatcttaatgggcagctgaagtaccttcacactcccgatatgaagaggaaaaagcaagaa
cttgatgaacacgaaaagaatctcaaactgatagagcaaaaactaggaatgactcccaca
cgtaagtgtaatgattcactgcctcatccagtgacagactgtccaattcctcccaagaga
ataagaagagaagctgcaagacaaaacaggattataaccaaaactgatgtgtga
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