Octadecabacter antarcticus: OAN307_c23890
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Entry
OAN307_c23890 CDS
T02538
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oat
Octadecabacter antarcticus
Pathway
oat03030
DNA replication
oat03410
Base excision repair
oat03420
Nucleotide excision repair
oat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OAN307_c23890 (ligA)
03410 Base excision repair
OAN307_c23890 (ligA)
03420 Nucleotide excision repair
OAN307_c23890 (ligA)
03430 Mismatch repair
OAN307_c23890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oat03032
]
OAN307_c23890 (ligA)
03400 DNA repair and recombination proteins [BR:
oat03400
]
OAN307_c23890 (ligA)
Enzymes [BR:
oat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OAN307_c23890 (ligA)
DNA replication proteins [BR:
oat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OAN307_c23890 (ligA)
DNA repair and recombination proteins [BR:
oat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OAN307_c23890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OAN307_c23890 (ligA)
MMR (mismatch excision repair)
DNA ligase
OAN307_c23890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OAN307_c23890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AGI68004
UniProt:
M9R5X0
LinkDB
All DBs
Position
2399198..2401318
Genome browser
AA seq
706 aa
AA seq
DB search
MSATTSIENLTKDEAAQELARLSALLAQANAEYHQADAPRIPDADYDALKLRNAMIEARF
SDLKRRDSPSETVGATPADGFGKVPHALRMLSLGNAFTDDDVTEFDKSVRKFLGLETGDL
AFTAEPKIDGLSLSLRYENGKLVQAATRGDGAVGENVTANARTIKDVPQVLLDAPKILEV
RGEVYMSHSDFAALNTRQSNVGSKTFANPRNAAAGSLRQLDASITKSRPLKFFAYAWGEV
SAPLADTQSGAIARLKTLGFQTNPLTKICASPSEMIAHYRDIEMQRATLGYDIDGVVYKV
DDLSLQRRLGFRSTTPRWAIAHKFPAELAWTTLDAIDIQVGRTGALSPVARLSPVTVGGV
VVANATLHNEDYIAGRGNKGDDIRGGKDIRVGDWVQIYRAGDVIPKVADVDLSKRLGETA
PFDFPTTCPKCGSDAVREEGDVVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQIE
AFYNDDQLAVKEPADIFTLGARDMGSLTKLANRDGWGDTSVKKLWQAVDEKREIPVARLI
FALGIRHVGENASNLLAIHYGTWSTFEDAMTQASVGEGAGWDDLLGIDGVGAVMAASVVT
TFHQSAERASIDRLVAQLRPQDSARPRSNSPVAGKTVVFTGSLEKMTRAEAKARAESLGA
KVSGSVSAKTDLLIAGPGAGSKAKKATDLGIETMDEDGWLALTKDV
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcgacaacgtcgattgaaaatctgaccaaggacgaggccgcgcaagaacttgcg
cggctgtctgcacttctggcgcaggccaacgcggagtatcatcaagcagatgcgccaagg
atcccagacgcagactacgatgcgttgaagctgcgcaacgcgatgatcgaggcgcgattt
agcgatcttaagcgtcgcgacagcccgtctgaaacggtcggtgcaacgccggcagatggt
tttggaaaagtcccccatgcgttgcggatgctgtcattgggcaatgcattcaccgatgat
gacgtcactgaatttgacaaatcagtgcgcaagttccttggccttgaaactggggatttg
gcgttcaccgcagagccgaagattgacggcttatcactgtccctgcgctacgagaacggc
aaattggtgcaagccgcgacgcgtggcgacggcgcggttggtgaaaatgtcaccgccaat
gcgcgcacgataaaggatgtgccgcaggtgctattggatgcaccaaaaatccttgaggtg
cgcggtgaggtctatatgtcccactcggattttgcggcattgaacacacgtcaaagcaac
gtgggcagcaagacctttgccaacccgcgaaacgcggctgcgggatcgctgcgccaattg
gacgcgagcattaccaaatcgcgtcctttaaaattctttgcgtatgcttggggtgaggtt
tcagcccccttggccgacacccaatctggcgcgattgcgcggctcaaaacgcttggcttt
caaaccaacccgctgacaaaaatctgtgccagccccagcgaaatgatcgcccattaccgc
gacatcgaaatgcagcgcgcgacccttggctatgacatcgacggcgtcgtctacaaggtt
gatgacctgtcattgcagcgtcggttggggttccggtccaccacgccgcgttgggcgatt
gcgcataaatttcccgctgaattggcgtggacgacattggacgccatcgacattcaggtt
gggcgtacgggcgcgttgtcacccgttgcgcgcctgagccccgtcacagtcggcggcgtc
gtggtggcaaatgccacgctgcacaacgaagattatatcgcgggacgcggcaacaaaggc
gatgacattcgtggtggcaaagacatccgtgtcggggactgggtgcagatctaccgcgcg
ggcgacgtaatcccgaaagtggccgatgtagacctgtccaaacgcctgggcgaaacagcg
cctttcgatttcccgacgacctgcccaaaatgcggatcagacgctgtgcgtgaggagggc
gatgttgtccgccgctgcactggtggcttgatttgcccggcgcaagcagtggaaaagtta
aaacattttgtgtcccgcgcggcgtttgacatagacgggctcggcgccaagcagattgag
gcgttttacaacgatgaccagcttgcggtcaaagaacccgctgatattttcacgcttggg
gcccgcgacatgggcagcttaacaaagctcgccaatcgcgatggttggggcgacacaagc
gttaagaagctctggcaagcggttgatgaaaagcgtgaaattccagtggcgagattgatt
tttgcgctggggatcaggcatgttggcgaaaacgcgtcaaaccttttggcgatccattat
ggcacttggtcgacatttgaggacgcgatgacgcaggcgagtgttggtgaaggtgctgga
tgggatgacctgcttggcatcgacggggtcggcgcggttatggcggcgtcggttgtgacg
acttttcatcagtccgcagaacgcgcatcgattgacagattggtcgcccagttgcgtccg
caagactcggccagacccagatccaacagccctgtcgccggaaaaaccgtcgtgttcaca
ggttctttggaaaaaatgacacgggctgaggcaaaggcgcgcgccgaaagccttggcgcg
aaagtcagtgggtccgtcagcgcgaaaaccgacctgctaattgccggacctggggctgga
tcgaaggctaagaaggccaccgatcttggaattgaaacaatggatgaggacggctggctg
gcgctgacgaaagacgtatga
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