Oreochromis aureus (blue tilapia): 116314365
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Entry
116314365 CDS
T07295
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116314365 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oau03400
]
116314365 (lig4)
Enzymes [BR:
oau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116314365 (lig4)
DNA repair and recombination proteins [BR:
oau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116314365 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
116314365
NCBI-ProteinID:
XP_031588212
Ensembl:
ENSOABG00000015558
LinkDB
All DBs
Position
LG23:6087727..6096621
Genome browser
AA seq
910 aa
AA seq
DB search
MDSTSKTDASSQLSVASQVPFLHLCTTLEKIQKSKLRPEKSKILGYFIEKWREFHSALHK
DNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVATSNATKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPAVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSTFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAYNPAADTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLINDQKLGKETLKKRHELLQTVFTPVKGRLHLVPKAEARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLTKHWKVYRKNNPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLHIDNDEPQKKKRKLPVKPKKVIGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGFVVQNPGRDTYCVVAGVENMRVKNLISSN
QHDIVWATWLLECLDRKEVVPWQPRHMIHMSPSTREHFAKEYDNYGDSYFVDTDEQQLRE
VFNRISSADVSKEVNVTQVEERYSWDDLPTSMFRPFTAYMDRFADIGDPKSAIPATCLDT
RSLEFRYHGGKVVEKLEEGVSHVIIAEETRLLDLRTLRRCFRRKFKIVKETWVTDSIKAG
HVMNDTEYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggacagcacttccaaaactgatgcttccagtcagttatctgttgcttctcaggttcct
ttccttcacttgtgtaccacactagaaaaaattcaaaagtccaaactccgtccagagaaa
tccaagatccttgggtacttcattgagaaatggcgtgaatttcattctgccctccacaaa
gacaaccccaaaactacagactctttctatcctgccatgcgcctcatagtcccgcctttt
gaacgagagcgaatggcatatggcatcaaagagagcatgctggctaaactctacattgat
gtattaggcctcccaaaaaatggccctgaggctaataagctgttgaattaccgtgctccg
accacatcccaaggagaagctggagactttgctggcatggcgtattttgtgctgaagaaa
cgatgcaccagccaaggaaatctcagtattaaagaggtcaacgacttcctggattcagta
gccaccagcaacgccaccaagcagaaagatcttgtcaaaaagagtctgctgcacctcatc
acccagagctcagctcttgagcaaaagtggctcattagaatgattctgaaggacatgaag
ctcgggatcagcaaagaaaccgttctccaagttttccacccagatgctgctgagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagttacacaatccagccgtgtcctta
agtgaagtctctattggacttttttctgctttcaaacctatgctggcagctgtggctaac
atccgcaacgtggagaaacagatgggaaacagcactttttacattgagacaaagctggat
ggagagcgcattcagctgcacaaagatggggatgtgtacaagtacttcagccgaaatgct
tttgagtacacgcagcagtttggaggatccccgttggaaggatcactgacgccttatatc
cacaatgtttttaaaagcaatgtggtgaactgcattctcgatggtgagatgatggcatac
aacccggcagcagacaccttcatgcagaaagggagcaaatttgacatcaagaggctgatg
gatgactccgagttgcagacatgcttctgtgtgtttgacgtgctgttaataaatgatcag
aagctaggcaaagaaactctcaagaagcgacatgagcttcttcagacagttttcactcca
gtcaagggaaggctgcatctggtgccaaaggctgaagccagaaccatgcaggaggtggtg
aatgctctcaatgatgccattgacagcagagaagaggggatcatggtgaaggatccttta
tccatctacaaacctgacaagcgaggtgaaggctggctgaagataaaaccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggtggctactggggaaaagggaga
aggggtggcatgatgtcccatttcttatgtgctgtggccgaagctccaaagcctggcgag
aaaccttcagttttccataccctttgccgcattggctccggctacaccatgaaagaattg
tatgaccttggtttaaagctcaccaaacactggaaggtctaccggaaaaacaacccacca
gcatccatcctgtgtggaacagagaaaccggaagtctacattgaaccctgcaactccgtt
atcatccaggttaaggcggctgagatagtcggaagtgacatgtataaaaccaactgtact
ctgcgcttccccaggattgagaagattcgagatgacaaagaatggcaccagtgcatgaca
ctggcagagctggatcagttccgcagcaaggcgtctgggaaacttgcctctcggcacctt
cacattgacaacgatgaaccgcaaaagaaaaagcgcaagctgccagtcaaacccaagaaa
gtgatcggcatcattgaccactttaagccccaggacctttccggggtgaccaaggaaaca
gatatgtttgaggatgtggagttctgcatcctgaatggcaccgaagatcatcccaagtct
gaactggaaaagggtgtggccaggtgtggaggttttgtggttcagaaccctggacgggac
acctactgcgtggttgctggtgtggagaacatgcgcgtgaagaacctgatttcatccaac
cagcatgacatagtttgggccacctggctgctggagtgtctggaccggaaggaggtggtt
ccatggcaaccccgccacatgatccacatgtcgccttccaccagggagcactttgccaag
gagtacgacaactatggcgacagctactttgttgacacagacgagcagcagctgcgggag
gtgttcaacaggatcagcagcgcagacgtgtcaaaggaggtgaatgtcacgcaggtggag
gaacgctacagctgggatgaccttccaaccagcatgttcagaccattcacagcatatatg
gacagatttgctgacataggagaccctaaaagtgccatacctgccacctgcctggacacc
aggtcattggagtttcgctaccatggaggaaaagtggtggaaaagctggaggaaggcgtt
tcacatgttattattgccgaggaaacaagacttctggatttgaggactctgaggcgctgc
tttaggaggaagtttaagatagtaaaagagacatgggtaactgattcaatcaaagcaggg
catgtgatgaatgacactgaatatctggcttga
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