Oreochromis aureus (blue tilapia): 116315976
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Entry
116315976 CDS
T07295
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
oau
Oreochromis aureus (blue tilapia)
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oau03036
]
116315976 (smchd1)
03400 DNA repair and recombination proteins [BR:
oau03400
]
116315976 (smchd1)
Chromosome and associated proteins [BR:
oau03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116315976 (smchd1)
DNA repair and recombination proteins [BR:
oau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
116315976 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMC_hinge
Glyco_hydro2_C5
HATPase_c
YnfE
Motif
Other DBs
NCBI-GeneID:
116315976
NCBI-ProteinID:
XP_039473436
LinkDB
All DBs
Position
LG9:21572397..21606195
Genome browser
AA seq
1989 aa
AA seq
DB search
MLTSASQCRSAAASLQQGEKKIRVYDLRLETEAKTCKLFKIAGRDFNDFLQALHKVFGIP
SSETFVVATTDRIVLDFDRFKELQDDTTLYLLQHEHQVLPTATVENISFMPHYDTLIKGG
TYEYYASENKESLAYPLAELIDNSLSATAKNTGTRIIEIRMQFDESLGKPAVIVLDNGRG
MTTKQLNKWAVYRHSKFTKETGSFARREEDYVRPDPVPRSLNSDISYFGVGGKQAVFHFG
NVVRMISKPVGLPDVHELVLSEEEFERKEKNKEDIYSTTILNRKPGDFSHVSEDERFLRT
IIDEERGKESFTAVVITGLKEKHISFLKENFDAWTRHLAHIYHYYIHGINGNDLRQGSKK
TAQQPTIDIQITLREKPNKCPRVLNLREVDDDMQTLYINSAADTFEFKASAGPGGGTVEG
VLRYHPFLYDKETYPKYPEDPKDPKDTCNANAASSENDNLENEPGVVTQEERKIFECFWN
GRLIPGTKVAEFDWCSRKHNSRTASGIPPECYRRLSGVLFTDDNFQVTTNKMTFMDLELK
LKNNQTIFSLVQNGQKSFRGNIQKEFTQWLRTCNENFDKQIKFVGFKEIKTRTDVPTKKM
QHPWAVFSAIEWGGKTYKTGQLVKTHNTNPILYGKVVQFLLYGNFDGDVYATGGQVEVSR
EPKALWDMNKIVPISKIDKTATDEAIKKNIDSDSEKLPDKLNVEWPNGNPLQNNAILSAG
TTLGPLKIEILNKRGEKLSRMPPVGQGKGTKLCVKLTLLHHGLKSDKELAAYVAPHLANT
GFWFKKMDHLTELGKYTLNLTTVVHETNAVSFGGRALPRFTLKFTIKEGEAASFDISAMS
PTLRVGVPFDIPLQIKDGYGHSTTLTSKLKPELKCCGLDLSYETFSSSGTTFTIKSVKAR
GKVLNYQQSKSYDLEVTLPGLKQHTKTIKISLLPGIPHSLHVKPEETSIDVENGDQVTFH
VEIHDEAGNIAANPKQIVRCEVKGFPPVVTDCSSTGAGQLVTKPINLKIIKGEQQDLKAQ
FVMPSYKNIPLVIKGLRVLPSTRVSVMELYSQDNENLVLRNSEKIEWIAGGLLENLFYKL
YDEADREVPLTAEIASMIKVNWTGDVFVEDLVQGKLPDLQVPKRVGEQRFYQVSYQDQSV
SVSFTIVPRPDEPERLNVALPQTTVKLGEILSGNISLELVDQFDNLTKTLTPTCVNHIKV
EAEGLDKSAITFKWQESSCAAMVTGIRFESGSLGPRELRFSYSDFVERVSIKVTAGLPAQ
LKLISAPEQPLQVLNDHGISKPFVVQLCDDWGNPSPDQRVVVDLKTSPPGLTVKTNVISQ
PVNAEGKASFVVNGLSGPKGCYQLQFKGSFNKKPIPGPSVSLTVLPDPKKPVSLSVEYDT
SVKFFAGSKFPVFSVTVVSDEGSPITTFNPAAVAMFIWDGVSSGKKPPERAIELKCNKPM
KNEKNDCFHFRDKEIPNKVGKHTIQFSLRIDKNDVLYSNQIRINVVANQPVKLGPVSQTP
TPVVSYSKDIASRTLVENMTLKIMDLYGNPAGEDLGGKVIITIKSSDGERNKSFPLFETG
ASSLAINLVEGKAHIPRLAIRENSPGDNSSTYILVFKPEVYAHLITLAAFELPFLFYNDA
QNQQKMSELTRKKDELSSAIEKYNETLRTYKELLGLLTTSCLNASKKEADLKNELCRRKV
TIPHPISAQHIDALIKKKSTEAEEIQKVSRRVFPVRDNFRGQAEVLGMVGHLAVVQDDAA
AWVISWHIRGDMDCVITKTTEAAQRIYRDTQGRQQVMALDSVLVSPGNRPLPHIRNGYPL
FEPHGNPVYARELLIYPCDPESCDIVFKNILGDTILIDDLDSANNYRRAVVQNRIQCPTI
LTRQGDRVSGRGKFGGAQNRAPPMATLHMFGAPLPQQYHSLMEQIELLRQYCSAVSKREE
IERERDDHVKKIASPDVQQKEKDLEDKKRQLREIEKELASASAKGMKRGAVDGGQPSSSI
SKRARQSST
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgctgacttctgcctctcagtgtcggtctgcagcagcttccttgcagcagggagagaag
aagatccgtgtttacgacctccgcttagaaacggaggcgaaaacctgcaagctgtttaaa
atagctggtcgggacttcaacgactttctccaagctctgcacaaggtatttggaatccct
tcatctgagacatttgtggtggcaacgactgacagaattgttctagattttgacagattt
aaggaactccaggatgacacaaccctttacttgttgcaacatgagcaccaggttctgcct
acggcaacggtggaaaacatatcgtttatgcctcactatgatacgctgataaagggtggg
acttatgagtactatgctagtgaaaacaaggagtcattagcctatccacttgccgagctc
atcgacaactctctttcagccacagctaaaaacacaggaacgaggataatagagataagg
atgcagtttgatgaaagtcttgggaaacctgccgtcattgtcctggacaatggacgtggc
atgactacaaagcagctcaataaatgggcagtttacagacactccaaatttacaaaagaa
accggcagttttgcaagaagagaagaagactacgtccgccctgatcctgtacctcgaagt
cttaatagtgatatctcgtactttggagttggaggaaaacaggctgttttccactttgga
aatgtagtcagaatgattagcaagccagtggggttaccagatgttcatgagttggttcta
tcagaagaagaatttgaaagaaaggaaaagaacaaagaggatatttatagcaccaccatc
ctaaacaggaagcctggcgacttttcacacgtgagtgaagatgagcgcttccttcgtacc
atcatcgatgaggaacgtggcaaggaaagcttcacggccgtagttattacaggactgaag
gaaaagcatatctccttcctgaaagagaattttgatgcatggaccagacatctagcgcac
atatatcactattacattcatggaatcaatggaaatgacctgagacaaggttctaaaaag
acagctcaacaacctacgattgacattcagatcactttacgcgaaaaaccaaacaaatgt
ccccgtgtgctgaacctgagggaagttgacgatgacatgcaaactttgtacattaactct
gctgcggacacctttgagttcaaggcatccgctggaccgggtggtggcacagtggaggga
gtgctgcgttatcatccattcctctatgacaaggagacttatcctaaatatcctgaagat
cctaaagatcccaaagatacatgtaatgcaaacgcagcgtcttctgaaaatgacaattta
gaaaatgagcctggagtcgtgactcaggaagaaaggaagatcttcgagtgtttctggaat
ggacggctcatacctggcaccaaagtggctgagtttgactggtgttctcgtaaacataac
agcagaacagcatcaggtatacccccggagtgttaccgtcggctttcaggagtgcttttc
actgatgacaatttccaggtcaccacaaacaagatgaccttcatggaccttgagctgaaa
ctgaagaacaatcaaactatcttctcactggttcagaacggacagaaatcgtttagaggt
aacatccagaaggagttcacacaatggcttcgaacctgtaatgaaaactttgacaagcaa
atcaagtttgtgggcttcaaggagattaaaacacggacagatgtgcctactaagaaaatg
cagcatccgtgggcagtcttctccgccatcgagtggggaggcaagacatacaaaacaggc
caacttgtgaagacgcacaatacaaatcccattctgtacggtaaagtggttcagtttttg
ctgtatggaaatttcgatggtgacgtctatgccacgggaggacaggtggaagtgtctcga
gagcccaaagcactttgggacatgaacaagatcgtacccatttccaagatcgacaagaca
gccactgatgaagccatcaagaaaaatattgatagtgactctgagaagcttccagataag
ctgaatgtggaatggcccaatggtaaccccttgcaaaataatgccattctttccgccggg
actactttagggcctcttaaaattgagatcctgaacaagaggggagagaaattatctcgg
atgcccccggtgggccagggaaaagggacaaaactgtgtgttaagctcacgttactccat
catggtctaaaatcagacaaagagcttgctgcttatgttgccccacatttagcaaatact
ggtttctggttcaaaaaaatggatcatctgactgagctgggaaagtacacgctgaatttg
accacagtggtccatgaaacaaacgctgtcagctttggcggtagagcgcttccaaggttc
acactgaagtttaccattaaagagggcgaagcagcaagcttcgatatcagtgcaatgagc
cccacgctgcgagtgggcgtgccgtttgacattcctctgcagataaaagatggttatggc
cactcaacgaccctcacttctaaactcaaacctgagctcaaatgctgtggtctggatctg
agttatgagacattctccagcagtggaaccacattcaccatcaaaagtgtcaaagcgaga
ggaaaagtcctgaattaccagcaatccaagagctatgacctggaagtgaccctgcctggc
ctgaaacaacacaccaagaccattaagatcagtcttcttcctggtatcccacattccctc
cacgtgaaaccagaggaaacgtcaatcgatgtggagaacggagaccaggtcacgtttcat
gttgaaattcacgatgaggctggaaatatcgccgctaaccccaaacagatcgtccgctgc
gaggttaaaggtttcccccccgtggtcactgattgcagcagcaccggtgctggccagctt
gtgacaaagcccattaacctgaaaataatcaaaggagagcaacaagacctcaaagctcaa
tttgtgatgcctagttacaaaaacataccgctggtcataaaggggctgagggtgctgccc
agcacacgggtctctgtgatggagctgtacagtcaggacaatgagaatctggtgctgagg
aacagtgaaaagatcgaatggatagccggcggactgctggagaacttattctacaagctg
tatgatgaagctgacagggaggtaccgctcactgctgaaatagcctccatgatcaaggtt
aactggacaggagatgtctttgtggaagatctggtccaggggaagctgcctgatttacag
gtacctaaacgggtgggagagcagcgcttctaccaggtctcctatcaggaccagagtgtg
tccgtctccttcactatcgtgcctcgtccagatgaaccagagcgtctaaatgtagcttta
ccccaaaccacagtgaagcttggtgagatcctctccggaaacatcagcttggagcttgtg
gaccagtttgacaatttaaccaagacgcttacccccacctgtgtgaaccacataaaagtg
gaagctgaggggctggacaaatcagccatcacatttaaatggcaggagagcagctgtgct
gccatggtgacgggaattcgtttcgagtcagggtctctcggcccccgagaactgcgcttc
agctactctgactttgtggagcgtgtcagtattaaagtgaccgcaggactccctgctcag
cttaaactcatcagtgcaccggagcagcctttgcaggtattaaatgatcacggcatctcc
aaaccatttgtcgtccagctgtgtgatgattggggaaacccctctccagaccagagggtt
gtagtggacttaaagacttcacctccaggactgacggtgaaaaccaatgttatttcacaa
cctgtgaacgcagaagggaaagcctctttcgttgttaatggtttgagcgggccgaagggg
tgctatcagctgcagtttaagggctccttcaacaaaaaacccatccctggtccatcagtg
agcctcactgtcctccctgatcccaaaaaaccagtcagcctgtcggtggagtatgacacc
agtgtcaagttttttgctggaagcaaattcccagttttctcagtgactgtggtgtctgat
gagggaagtccaataactacttttaatccagctgctgtggccatgttcatatgggatggg
gtatcttcagggaaaaaacctccagaaagagccattgagctgaagtgtaataaacccatg
aaaaatgaaaagaatgactgttttcacttcagagacaaagaaatcccaaacaaagttgga
aagcacaccatacagttttctcttcgtattgacaaaaatgacgttctctacagcaatcag
attcgtataaatgtggtggccaatcagcctgttaaactgggacctgtctctcagactcca
accccagttgtttcctacagcaaggacattgccagccgaaccttggttgagaatatgaca
ctgaagataatggatttgtatggcaacccagcgggggaggacctgggagggaaggtgatc
atcactataaagtcctcagatggagagagaaacaaaagcttccctctttttgaaacagga
gccagcagccttgcaattaacttagttgagggcaaggcccacatccctaggctggctatc
agggagaatagccccggtgacaatagcagcacctacatccttgttttcaaacctgaagtg
tatgcccatctcataaccctggctgcttttgagctccccttccttttttacaatgatgca
cagaaccagcaaaaaatgtctgaactgaccaggaaaaaagatgagctcagcagtgctatt
gagaaatataacgaaacattgcgtacatacaaggagctccttgggttgctgacgacttct
tgcctgaatgccagtaagaaagaggctgatcttaaaaacgagctgtgccggaggaaagtg
acaatccctcaccccatatctgcacaacatattgatgcactaataaaaaagaagagtact
gaagcggaagagattcagaaagtgtcccgacgagttttccccgtccgtgacaactttagg
gggcaggcagaagttttgggaatggttggccacctggccgtcgtgcaggatgatgccgcc
gcgtgggtcatctcctggcacatcagaggtgatatggactgtgtcatcaccaaaacaaca
gaagcagcgcagcggatctatcgtgacacgcagggcaggcagcaggtcatggccctcgac
agcgtccttgtgtcaccaggaaacagaccgctgccacacatacgaaatggctacccgctc
tttgaaccccatgggaacccggtgtacgccagagagctgctgatatacccctgtgatccg
gagagctgtgacatcgtgtttaagaacatcctgggagatactattctgatagatgacctg
gactctgcaaataactacagaagggcggtggtgcagaacaggatccaatgtcccaccata
ctgaccaggcagggggacagggtcagtggcaggggaaagtttggaggtgcacagaacagg
gccccaccgatggccacattacacatgtttggtgcccccctcccacagcagtaccacagt
ctaatggaacaaatagagctgctccgccagtactgctcagctgtatcgaagagggaggaa
atagaaagggagcgagatgatcacgtcaaaaaaattgcgtctcctgatgtgcagcaaaag
gaaaaagacttggaagacaaaaagaggcagctaagagagattgaaaaggaactcgcatca
gcatcagcaaaaggaatgaaacgaggcgctgtggatggtggtcagccctccagcagcatt
tcaaaaagagcaagacagagttccacataa
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