Oreochromis aureus (blue tilapia): 116334031
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Entry
116334031 CDS
T07295
Symbol
smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116334031 (smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oau03019
]
116334031 (smg6)
03032 DNA replication proteins [BR:
oau03032
]
116334031 (smg6)
Messenger RNA biogenesis [BR:
oau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116334031 (smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
116334031 (smg6)
DNA replication proteins [BR:
oau03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
116334031 (smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
116334031
NCBI-ProteinID:
XP_039474289
Ensembl:
ENSOABG00000006533
LinkDB
All DBs
Position
LG10:18564665..18581900
Genome browser
AA seq
1649 aa
AA seq
DB search
MAAELDRVRISAAELRAEASNSVSVTECQKEEQQEHHIHKQHRRREGKRPDLQRYQPVPG
HGRRHHDSEGETGQSEPLAAESHEHDQPSQSEKKAESGETPLERQGWTDSGTGTNKRDED
RMRGDGGNSQNCRKGRHAQNKSDANDEKLLVEKENEHQEPVGAAKPAKKTRKPDREFYQP
GSRRNIQGKDSGAGREQDKPPPRKQERKPEPESQQSTRESGLDTKTSIQKQGGKDKGGKG
TQESAKVSTSSEASRKQGSQDVETPEIPVDASVEKITSKVENLNIQEKDKVECTSQDAGD
LSCKGREPTDKKRRGQGSGTKDEEEKSEKKRERGNRRRRGVEKTQDSRKEDEAGDQGKNN
QRNTEREKDKRAVEADIEKMDKAKQTHQSKGRENRRENRSGETNNSRSRDAERDAKTEKN
VNRNRSNANVATPTSKRYSKSDIRRSRNRTYSSSSASSVTSLDYPGLGKDVESTKWSHSR
DNNKKGTIVGGERQRQHLKSWTTNEESSTESLEGSEMSDRADDRRRKRRGGEGQLSRERQ
RGERNRPKGNKGGGRGILRVSLEKQSDTSSHSGDAQHRKEGPVPRGRGGGILVLPARTDI
SNSPEVGQRLLFGGSRGGAAGRSRGGRGGGARRLWDPNNPDQKPALTSNRSSQHSSLQQS
VYLQTGTGYGQLHFLDTDDEVAGSPPVTQGERFRSQQASAMAYYKFQNSDNPYCYPVPTS
GPHNPNTNQRYPFPYHMGPYQMAHTNSMYPSPGVGQFCSNYRGSGYSLPGAGGSVTFEEA
EQHTRGELGRLLRAADAQELQLSNLLSRDRVSADGLDRMAQLRVDLLGIYEQVILTDIEF
SDSQNVDQALWKNVFYQVIERFRQLLKEPTYDNAPHIRNKLLTLLDEGELFFDALLQKLQ
TVYQFKLEDYMDGMAIRARPLRKTVKYALISAQRCMICQGDIARYREQASDSANYGKARS
WYLKAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEA
KRKAEQLEQRRKQEHEGGSRGPAVRGRGRREEGARVEIWIRPSGQAAAPSSQRGGSESSR
DSEQDGELGSLSAADLNKRFILSFLHAHGKLFTKVGMETFPGAATRVLQEFRTLLQHGPH
MLGSTHMLQIITINMFAIHNANSKGEEGEVRSVLQEQSTALGLGMFALLVQRCTELLQEI
PAEPVPMTDGEEEGKAEEMEGLVRVSAFPLDLREMLPSIKVWSDWMLGHPDQWNPPPCSI
DCSPNVWQCLADLCNLLARVDHGEVPLYKVDSEEGEGDEELMLLQLKEDRLLAGFVPLLA
APQEPCYTDGHTDMAIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVATPPAPNHS
TDTRSRQDSLTEKEGDDVILEAVSSLSASEEEEVEEPGDSENDIRQLKARRHVLANKLAQ
QQKRRDKIQEVLQTGGQLELEVRPLFLVPDTNGFIDHLTGLKKLLQCGTYIIVVPLIVIT
ELDGLAKGQDSFGGGVESGGRNYSASAAHVRAVQEKARMAVAFLEKGFEAREQCLRALTS
RGNQLESIAFRSEDMSGQQGNNDDVILSCCLHYCKDKAKDFMPHQRNGTVRLQREVVLLT
DDRNLRVKALTRNVPVRDIPSFLSWAKVG
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaactggatagagtgcgaatctcagctgcggaactccgagctgaagcgtcg
aattcagtcagcgttactgagtgtcagaaagaggaacaacaggagcatcacatacacaag
cagcacagaaggcgtgaaggaaagcgtcctgatctgcaacgctaccagccagttcctgga
catggacgacgtcaccatgacagtgagggagaaactggtcaaagtgagcccctagctgct
gaatcacatgagcatgatcagccatcccagagtgaaaaaaaggctgagtctggggagaca
cctttggagagacaagggtggacagacagtgggacaggtaccaataaaagggatgaagac
aggatgagaggcgatggtggtaacagtcagaactgcagaaaagggagacatgcgcagaat
aaatcagatgcaaatgatgaaaaattgcttgttgaaaaggaaaatgaacatcaagaacct
gtaggagcagctaagccagcaaagaaaacccgaaaaccagacagagaattttatcaacct
gggagtagaagaaacattcaagggaaggacagtggggctggaagagaacaggataagcct
cctcctagaaagcaagagcgaaaacccgagccagaatctcagcaaagtacaagggaaagt
ggattggacacaaaaacctctatacagaagcagggtggaaaagataaaggaggaaaaggc
acacaagagagtgcaaaggtgtctacttccagtgaggcaagtagaaagcaaggaagccaa
gacgtggaaacgcctgaaatacccgtcgatgcttcagtggagaaaattactagcaaagtt
gaaaatctcaacatacaagaaaaggataaagttgaatgtacaagtcaagatgctggagat
ctaagttgcaagggaagggaaccaactgacaagaaaaggcgaggtcaagggtcaggaacc
aaagatgaggaagaaaagtcagagaagaagagagaaaggggaaaccgaaggaggagaggc
gtggaaaagactcaggactccagaaaagaagatgaagcaggtgatcagggtaagaataat
caaaggaatactgaaagggaaaaagacaagagagctgtagaagcagacatcgagaaaatg
gataaagcaaagcaaacacaccaaagtaaaggaagagagaaccgcagagaaaaccgaagt
ggtgaaaccaacaacagcagatccagagatgctgagagagatgccaagacagaaaaaaac
gtaaacagaaatcgatccaatgcaaatgtcgcaacaccaacctcaaaacgctattccaaa
tcagatattcggcgctcacgtaatcgaacttacagcagtagctcagcgagcagtgtgacc
agcctagattatcctggactaggaaaggatgtggagagtacaaagtggtcacattctaga
gacaacaataaaaaggggactattgttggtggagaaagacaaaggcaacatttaaaaagt
tggacaacaaatgaggaatcctctacagaatcactggaaggaagtgagatgagtgacaga
gcagatgataggaggaggaagagaagaggtggtgagggccagttaagtagagagagacag
agaggtgaacgaaacagaccaaagggaaacaaaggtggaggtcggggaatcctcagggtc
tctctggaaaaacagtcggacacctcgtcacatagtggagatgcacaacatcgcaaggaa
ggccccgttcctcgtggccgaggagggggcatcctggtacttccagcccgtacagatatc
tctaattcacctgaagtggggcaaagacttctttttggtggaagtagaggtggggcagct
ggcaggagtagaggaggtcgaggaggaggagcaaggcgactctgggatccaaataaccca
gaccaaaaacctgctcttaccagcaatcggtcctcacagcattcatctcttcagcagtct
gtatatcttcagacaggtacaggatatggacagcttcattttctggacacagatgatgag
gtagcagggagccctccagtcacgcagggtgagcgctttcgatcccagcaggcttctgcc
atggcctactacaaattccaaaactcggataacccatattgctaccctgtgcccaccagc
ggcccacataatcctaacaccaaccagcgctatccatttccttatcatatgggaccctac
caaatggctcacactaatagcatgtatccaagccctggtgtgggtcagttctgcagtaat
tacaggggatcaggttattccctcccaggtgcaggaggcagtgtaacatttgaagaggca
gagcaacacaccagaggggagctgggaagactgctgagggctgcagatgcacaggagctt
cagctcagtaatctgctctcccgggatagagtgagtgctgatggactggatcgcatggcc
cagctcagagtggaccttctggggatatatgagcaggtcatcctgacagacatcgagttc
tcagactcccagaacgtggatcaggctttgtggaagaatgtcttttaccaggtcatagag
cgcttccggcagctactcaaagagcccacctatgacaatgcccctcatatcagaaacaag
ctccttacactgcttgatgagggcgaattattctttgacgcgctacttcagaagcttcag
acagtataccaatttaagttagaggattatatggatggcatggctatcagggctcgtcca
ttgcgcaaaacggtgaagtatgcactcattagtgctcagcgctgtatgatttgtcagggt
gacatagcacgttatcgggagcaagccagtgactctgccaactatggcaaggctcgcagc
tggtatctgaaggcccagcagattgcccccaaaaatggacgcccgtacaaccagctggct
ctgctggctgtttatacaaagcggaagttagatgctgtgtattattatatgcgtagcttg
gcagcttccaatcccattctgactgcaaaggagagcctgatgagtctttttgaggaagcc
aagcgtaaggcagagcagcttgagcaaaggaggaagcaggagcatgaagggggctccagg
ggtccagcagtgagaggaagaggaagaagggaggaaggagcacgtgtggagatctggatt
cgccccagtggacaggcagcagcaccttcctctcagagaggaggtagtgagtccagcaga
gattctgaacaagatggagagctgggcagtctcagcgctgctgacctcaataagagattc
attctgagtttcctgcatgctcatggaaagctcttcactaaagtgggcatggaaacgttt
cctggagcggcgacccgtgttctgcaggaattcaggacgttgctccaacacggtccacac
atgctgggaagtacacacatgctgcagatcatcaccattaatatgttcgccatacacaat
gccaacagcaaaggtgaagaaggagaagtgcgatctgttttacaagagcagagcactgcc
ctgggcctcggtatgtttgcactgctggtgcagcgctgcacagaacttcttcaagaaatt
cctgcagaaccagtcccaatgacagatggagaggaggagggtaaagcggaggagatggag
ggtcttgtgagagtctctgccttcccactagacctaagagaaatgctgccgagcatcaaa
gtctggtctgactggatgctgggacacccagaccagtggaacccaccaccatgcagtata
gattgcagccccaatgtctggcagtgcctggctgatctgtgtaacttgctggcacgcgtg
gaccatggcgaagtacccctgtacaaagtcgatagtgaagaaggagagggggatgaggag
cttatgctgcttcagttgaaggaagaccgcctgcttgctggctttgtaccgttgctggct
gcaccacaggagccatgttacacagacggacacactgacatggctatagcagcagattgt
aagagagttactgtgctgaagtactttttggaggctttgtgtggacaggaagagcctttg
ttggctttcaagggaggcaaatatgtctctgtggcaactcctcctgcacctaaccactca
acagatacaagaagcaggcaggattctctaacagaaaaagagggagatgatgtcatactc
gaggcagtgtcttctctctctgcatcagaggaagaggaagttgaggagcccggagacagc
gagaatgacatcagacagctcaaggcacgacgccatgtcctcgccaataaactggcacag
caacaaaagcgaagggacaaaatacaggaggtgctgcagacaggcgggcagttggagctt
gaagtgaggcctctctttctggttccagatacaaatggatttattgatcatttgacaggg
ctgaagaaactccttcagtgtggaacatacataatagttgtgccactcatcgtgattaca
gagttggatggcttggctaaaggccaggacagttttggtggaggagtggagtcaggaggg
cgcaactatagtgccagtgcggcccatgtgagggctgtgcaggagaaggctcggatggcg
gtggctttcttagaaaaaggattcgaagccagagaacagtgcctcagagctctaacgagc
agaggaaatcaactggagtctattgccttccgtagtgaggatatgtctgggcaacagggt
aacaatgatgatgttattctgtcctgctgtcttcactactgcaaagacaaggctaaagat
ttcatgcctcatcagagaaatggcaccgtgaggctccagagagaagtggtactcctcaca
gatgaccgtaacctccgtgtcaaagctttgacccgtaacgtacctgtgcgagacatccct
tctttcctcagctgggccaaagtgggctga
DBGET
integrated database retrieval system
