Oceanicaulis alexandrii: ABWI01_12885
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Entry
ABWI01_12885 CDS
T10771
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oax Oceanicaulis alexandrii
Pathway
oax03030
DNA replication
oax03410
Base excision repair
oax03420
Nucleotide excision repair
oax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWI01_12885 (ligA)
03410 Base excision repair
ABWI01_12885 (ligA)
03420 Nucleotide excision repair
ABWI01_12885 (ligA)
03430 Mismatch repair
ABWI01_12885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oax03032
]
ABWI01_12885 (ligA)
03400 DNA repair and recombination proteins [BR:
oax03400
]
ABWI01_12885 (ligA)
Enzymes [BR:
oax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWI01_12885 (ligA)
DNA replication proteins [BR:
oax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWI01_12885 (ligA)
DNA repair and recombination proteins [BR:
oax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWI01_12885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWI01_12885 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWI01_12885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWI01_12885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XHC20052
LinkDB
All DBs
Position
2663529..2665616
Genome browser
AA seq
695 aa
AA seq
DB search
MNAALKDVEALSSEDAATELERLAREIARHDAAYYEKDAPKISDAAYDALRARNAAIEAR
FPELKRKDSPSERVGAKPSEQFGEVVHAVPMLSLGNAFEDQDVRDFADRIRRFLNLKDDT
LVLTAEPKIDGLSANLRYEQGELVIGATRGDGRSGENVTANLKTLADIPHQLEGDVPDVL
EVRGEVYMSHADFASLNAMQEERGKPAYKNPRNAAAGSLRQIDPNVTAERPLRFFAYAWG
ELSEPLAETQYDAVKRLGALGFVINDDMVRVDSVDAVIAHYHALEEKRADLGYDIDGVVY
KVDRLDWQERLGFVARAPRWAIAHKFSPEKAVTRLNAIEIQVGRTGALTPVAKLEPVTVG
GVVVSNATLHNQDEIERKDVRVGDTVIIQRAGDVIPQVVEVVQGKRPEGARAFEFPTLCP
VCGSHAVREEGEVVRRCTGGLICDAQAVERLKHFVSRKAFDIEGLGAKQIEAFFHEGLVK
QPADIFTLRTRNDAGEINPPIQTREGWGERSAANLFGSIDQRRSIGLGRFLFALGIRHVG
EETSRLIARSFTSWQAVRETAEAANQPGEAFAAFMEIDGIGETAVKALAEFFAESHNQDA
LNALLAHVNVEDAEQIAAESPVAGKTVVFTGSLERFTRDEAKARAQSLGAKVSGSVSGKT
DILVAGPGAGSKLKKAQELGVQTMTEDEWLALIGG
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcgctaaaggatgtggaggcgctgtcctccgaagacgccgccacagaactc
gaacggctcgcccgcgaaatcgccaggcatgatgcggcgtattacgagaaagatgcgccg
aaaatctcggacgcggcctatgacgccctgcgcgcgcgcaacgccgccatcgaggcacgc
tttccagaactgaaacgcaaggacagcccgtctgagcgcgtcggcgccaaaccgtccgag
cagttcggcgaagtggttcacgccgtgccgatgctgtctttgggcaatgcgtttgaagac
caggatgtgcgcgatttcgcagaccgcatccgccgcttcctcaatctcaaagatgacact
ctggttctgaccgccgagcccaagattgacggtctgagcgccaatctgcgttatgaacag
ggcgagctggtgatcggcgccacccgcggcgacggccggtcgggcgagaacgtcaccgcc
aatctcaaaacccttgccgatattccccatcagcttgagggcgatgtgccggacgtgctg
gaggtgcgcggcgaggtttatatgagccatgcggatttcgcctcgctcaacgccatgcag
gaagagcgcggcaagcccgcctataaaaacccgcgcaacgccgccgccggctcgctgcgt
cagatcgacccgaatgtgaccgccgagcggcctttgcgctttttcgcttatgcctggggt
gagctgagcgagccgctggccgagacccagtatgacgcggtcaaacggctcggcgcattg
ggctttgtcatcaatgacgacatggtgcgggtggacagcgtcgatgcggtgatcgcgcat
taccatgcgctggaagagaaacgcgccgacttgggctatgacattgacggggtggtctac
aaggtggaccggctcgactggcaggagcggctgggcttcgtcgcccgcgcgccgcgctgg
gccatcgcgcacaaattctcgcccgaaaaagccgtgacgcggctcaacgccatcgagatc
caggtggggcgcacgggggcgctgacgcccgtcgccaagctcgaacccgtcactgtgggc
ggcgtggtggtgtccaacgccaccttgcacaatcaggatgaaatcgagcgcaaggatgtg
cgcgtgggcgacaccgtgatcatccagcgcgccggcgatgtgatcccgcaagtggtcgag
gtcgtgcagggcaaacgcccagagggcgctagagcctttgaatttcccaccctgtgcccc
gtttgcggcagccatgccgtgcgtgaagagggcgaggtggtgcgccggtgcacgggcggg
ctgatctgcgatgcgcaggcggtggaacggctcaagcatttcgtctctcggaaagccttc
gatattgaagggctcggtgcgaaacagatcgaagccttctttcatgagggcctggtcaaa
caacccgccgatattttcaccctgcgaacgcgcaatgacgccggcgagatcaatccgcct
atccagacccgcgaaggctggggcgagcgctcggcggcgaacctctttggctcgatcgat
cagcgccgcagcatcggccttggccgcttccttttcgcgctcggcatccgccatgtgggc
gaggaaacctcccgcctcatcgcgcgcagctttaccagctggcaggcggtgcgcgagacc
gccgaagctgcgaaccagcccggcgaagccttcgccgccttcatggagattgacggcatt
ggcgaaacggcggtgaaagccctcgctgagttcttcgccgaaagccataatcaggacgcg
ctgaacgcgctgctagcgcatgtgaacgtcgaggacgccgaacagatcgccgctgaaagc
ccggtcgccggcaagacggtggtgttcaccggttcgctggaacgtttcacccgcgatgaa
gcgaaggcgcgtgcgcagtcgctgggcgccaaggtgtcgggctctgtctcaggcaagacc
gacatcctcgtcgccggtcccggcgcgggctccaagctgaaaaaagcgcaggagctgggc
gttcagacgatgacggaagatgaatggttggcgttgatcgggggatga
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