KEGG   Congregicoccus parvus: ASA1KI_13070
Entry
ASA1KI_13070      CDS       T10563                                 
Symbol
ligA_1
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
oba  Congregicoccus parvus
Pathway
oba03030  DNA replication
oba03410  Base excision repair
oba03420  Nucleotide excision repair
oba03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oba00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ASA1KI_13070 (ligA_1)
   03410 Base excision repair
    ASA1KI_13070 (ligA_1)
   03420 Nucleotide excision repair
    ASA1KI_13070 (ligA_1)
   03430 Mismatch repair
    ASA1KI_13070 (ligA_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oba03032]
    ASA1KI_13070 (ligA_1)
   03400 DNA repair and recombination proteins [BR:oba03400]
    ASA1KI_13070 (ligA_1)
Enzymes [BR:oba01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ASA1KI_13070 (ligA_1)
DNA replication proteins [BR:oba03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ASA1KI_13070 (ligA_1)
DNA repair and recombination proteins [BR:oba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ASA1KI_13070 (ligA_1)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ASA1KI_13070 (ligA_1)
   MMR (mismatch excision repair)
    DNA ligase
     ASA1KI_13070 (ligA_1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ASA1KI_13070 (ligA_1)
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH BRCT_2 RNA_ligase
Other DBs
NCBI-ProteinID: BET66389
LinkDB
Position
1641674..1643698
AA seq 674 aa
MNAAEARLRIEELRRELERHRALYYREARPEISDTEYDALERELAELEQAFPDGSTEDSP
SRVVGDDRTEGFETRRHRAPMQSLDNTYSESELRAFGQRLAKLFGDVPLSYVVEPKIDGV
AVSVTYEQGRFVRAVTRGNGIEGDDVTANVRLIPTLPERLAGDDHPDVVEIRGEIYMTLQ
EFRRLNTARQEAGLEVFRNPRNLAAGTVKLLDTAEASRRRLDVVLYGMGFCSSPIVAAQS
GIHDKIREWGLPTVEKFWRVEGIDAVWTAIGELDRMRGGFAYATDGAVVKLDDLAQQREA
GSTAKAPRWAIAYKFAAERAETVLRRVTIQVGRTGVLTPVAELDPVQLAGTTVSRATLHN
HDEMRRKDIREGDTVLVEKAGEIIPAVVSVNLALRPGESVPYVFPTACPECATSVVQSPG
EVAWRCPNPDCPAQVRRRIEHFASKACMDIEGLGEAMVDALVSKGWLRSIADVYRLRRED
LLTLGKSVERSTDNLLAAISASRTAELWRFVHGLGIPGIGSTSAKDLARHFRSLAALAGA
GEAELLAIPGFGEKTAMAVRAFFNEPANQILIERLVDLGVAPTVPEASAGGGSEAFVGRT
FVLTGTLQRFTRDEATARIEAAGGRVSGSVSKKTSFVVAGSDAGSKLDKAQKLGVRVLTE
EEFLALWPESPQSS
NT seq 2025 nt   +upstreamnt  +downstreamnt
atgaacgccgccgaagcccgcttgcgcatcgaggagctgcgtcgcgaactggagcgccac
cgcgcgctctactaccgagaggcgcgtcccgagatttcggatacggaatacgacgcgctc
gagcgcgaactcgcggagttggagcaggcgttcccggatggctcgacggaagactcgccg
agccgggtcgtgggcgacgatcggacggagggcttcgaaacgcgtcggcatcgcgcaccg
atgcagagcttggacaacacctactccgaaagcgagttgcgtgctttcgggcagcggctg
gcgaagctgttcggtgacgtgccgttgtcctacgtggtcgaaccgaagatcgacggcgtt
gcggtgagcgtgacctacgagcaagggcgtttcgtccgtgcggtcacgcgtggcaacggc
atcgagggggacgacgtcacggcgaacgtgagactcatcccgacgctgccggagcgactc
gcgggcgacgaccatccggacgtcgtcgagatccggggcgagatctacatgacgttgcag
gagttccgtcggctcaacaccgcgcggcaagaggcggggctggaggtgttcaggaatccg
cgcaacctcgccgcaggtaccgtcaagctgctcgacaccgcggaggcttcgcgtcgtcgg
ctcgacgtcgtgctctacggcatgggcttttgcagcagcccgatcgtcgcggcgcagagc
ggcatccacgacaagatccgggagtgggggttgcccacggtggagaagttctggcgtgtc
gagggcatcgacgcggtctggacggcgatcggcgaactcgaccgcatgcgtggcggcttc
gcctatgcgaccgacggcgcggtggtgaagctcgacgatctcgcgcaacagcgcgaggcc
ggcagcacggccaaggctccgcgttgggcgatcgcctacaagttcgcggcggagcgtgcg
gagacggtgctgaggcgcgtcaccatccaagtggggcggaccggtgtgctcacgcccgtg
gccgaactcgatccggtgcaattggccgggaccaccgtgtcgcgagcgaccttgcacaac
cacgacgagatgcgccgcaaggacattcgcgagggagacaccgtgctggtggagaaggcg
ggcgaaatcatcccggctgtggtgagcgtcaacctcgcgttgcgtccgggggagagcgtg
ccgtacgtgtttccgactgcctgccccgagtgtgcgacgagcgtcgtgcaatcgccggga
gaggtggcgtggcgttgcccgaatcccgactgcccggcgcaagtgcgccgccggatcgag
cacttcgcctcgaaggcgtgcatggacatcgaggggctcggggaggcgatggtcgatgcg
ctcgtatccaaaggctggttacgcagcatcgccgacgtctaccggttgcgccgcgaggat
ctgctcacgttgggcaagagcgtggaacgttcgaccgacaatctgctcgcggcgatctcg
gcgagtcggaccgcggagttgtggcgattcgtgcacgggctcggcatcccggggatcggc
tcgacctcggcgaaggacttggcgcggcattttcggtcgctcgccgcgctcgcgggcgcg
ggagaggcggagttgctcgcgatccccggtttcggcgagaagacggcgatggcggtacga
gccttcttcaacgagccggccaaccaaatcctgatcgagcggctggtggatctcggcgtg
gcaccgacggtgccggaggcgagcgcgggcggcgggagcgaggcgttcgtgggtcgcacg
ttcgtgctgaccgggacgttgcagcgcttcacgcgcgacgaagcgacggcgcggatcgag
gctgccggaggtcgcgtctccgggagcgtgagcaagaagacgagtttcgtcgtggccggc
tcggacgccggatcgaagttggataaggcgcagaaactcggcgtgcgcgtgctgaccgag
gaagagtttctcgcgctctggccggaatcaccgcagtcgagctga

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