Lacunisphaera limnophila: Verru16b_00003
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Entry
Verru16b_00003 CDS
T04567
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
obg
Lacunisphaera limnophila
Pathway
obg03030
DNA replication
obg03410
Base excision repair
obg03420
Nucleotide excision repair
obg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Verru16b_00003 (ligA)
03410 Base excision repair
Verru16b_00003 (ligA)
03420 Nucleotide excision repair
Verru16b_00003 (ligA)
03430 Mismatch repair
Verru16b_00003 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
obg03032
]
Verru16b_00003 (ligA)
03400 DNA repair and recombination proteins [BR:
obg03400
]
Verru16b_00003 (ligA)
Enzymes [BR:
obg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Verru16b_00003 (ligA)
DNA replication proteins [BR:
obg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Verru16b_00003 (ligA)
DNA repair and recombination proteins [BR:
obg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Verru16b_00003 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Verru16b_00003 (ligA)
MMR (mismatch excision repair)
DNA ligase
Verru16b_00003 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Verru16b_00003 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
zf-FPG_IleRS
Troponin
Mustang
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
AOS42971
UniProt:
A0A1I7PH98
LinkDB
All DBs
Position
complement(2405..4621)
Genome browser
AA seq
738 aa
AA seq
DB search
MTPAEAQKRIAELRAEVSRHDERYYRQAKPEISDFEYDALKKELADLEGQFPQFARADSP
TQLVGDDRVQGFKEVAHRQKMLSLDNTYNEEEVRAFHTRLVKLLGRDDLRYTVEPKIDGL
AVSLTYEQGRFVRAVTRGKGDKGDDVTANVLTIASIPRELKGGAQAKVPDIVEIRGEIYL
TAAEFERINAERAAAGEELFANPRNTAAGTIKQLDSTEVAKRKLSIVLYSLGHCEPRVVE
SQADLHGRLQAWGLPGVERIWHAQGIDEAWAAINALDQLRRSFAYGTDGAVVKLNDMALQ
REVGSTDKAPRWAIAYKYKPDTARTRLKAITIQVGKTGILSPVAELEPVFLAGSTIARAT
LHNEEEIRRKDIRVGDLVEIEKAGEVIPAVLKSFPEERPAGAPEFDLPAAVGHKCPVCGG
KIAKLEVADEEAQGVAWKCQNYDCSAQRAGRLGFFCSRRALAIDGVGGVVAAKLVELGHV
QDPPDLYEVALETLATLNLGTAEEPRVFGEKNATKVVAAREAARALPLEKWLYALSVPDV
GESTARELGRRHRSFAELTDSKLLQAVLRRDALELERERDGPASKKNPPKDEVDKERRKA
RRVEIDAELTALNGGILAGIPSDIGPAVAASTVDFFTSEPGRRLLGKLAKLGIDPQGTVV
TAGRFTGKTFVLTGTLPTLKREEAEQKILAAGGKVSGSVSKKTAYVLAGEEAGSKLEKAK
ELGVAIIDEAEFLKMVQG
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgccgaggcccagaaacgcatcgctgaactcagggcggaggtgtcgcggcat
gacgagcgttactatcggcaggcgaagccggagatttccgattttgagtatgatgcgctg
aagaaggaattggccgacctcgagggacagtttccgcagtttgcccgcgccgattccccc
acgcagttagtcggcgacgaccgggtgcaggggttcaaggaggtcgcgcaccggcagaag
atgctgagcctcgacaacacctacaacgaggaggaggtgcgggccttccacacccggctg
gtcaagctgctgggccgggacgacctgcgttacacggtggagcccaagatcgacggcctc
gccgtgagcctgacctacgagcagggaaggttcgtgcgcgcggtcacccgcggcaagggc
gacaagggcgacgatgtgacggccaacgtgctcaccatcgcttccatccctcgtgagctc
aagggcggcgcccaagccaaggtgcccgatatcgtcgaaattcgcggcgaaatctacctg
accgcggccgagttcgagcgcatcaacgccgagcgcgccgcggcgggcgaagagctcttt
gccaatccgcgtaacacggcggccgggaccatcaagcagctcgattcaaccgaggtggcc
aaacgcaagctgtcgatcgtcctctacagcctcggccactgcgaaccccgcgtcgtggaa
tcgcaagccgacctgcatgggcggctgcaggcctggggcctgccgggggtggagcggatc
tggcacgcgcagggcatcgacgaagcgtgggcggccatcaacgcactggaccagctccgg
cggagctttgcctatggtaccgatggtgccgtggtgaagctgaatgacatggcgttgcaa
cgcgaggtcggctcgaccgacaaggccccgcgctgggccatcgcctacaaatacaagccc
gacactgcgcgcacgcggctgaaggccatcacgatccaggtcggcaagaccggcatcctc
agcccggtggcggaactcgagcccgttttcctggcgggcagcaccatcgcccgggccacg
ctgcacaacgaggaggagatccgccgcaaggacatccgggtgggcgatctcgtcgagatc
gagaaggccggcgaggtgatcccggcggtgttgaaatccttccccgaggagcgtccggcc
ggggcgccggagttcgacctgccggcggcggtcgggcacaagtgtccggtgtgcggcggc
aagattgccaagctggaggtcgccgacgaggaggcgcagggcgtggcgtggaagtgccag
aattacgattgctccgcccagcgggccgggcggctgggtttcttttgcagccggcgcgcg
ctcgccattgacggggtgggcggggtcgtggcggcaaaattggtcgaactcggccatgtg
caggatccgccggatttgtacgaggtggccctcgaaaccctcgcgacgctcaatctcggc
accgcggaggagccgcgggtctttggcgagaagaacgccacgaaggtcgtcgccgcgcgc
gaggccgcgcgggccctgccgctcgagaaatggctttatgccctgagtgtgccggacgtg
ggtgagtccaccgcccgggaactcggccggcggcaccggagctttgccgagctgacggat
tcgaaattgctccaagcggtgctgcggagagatgccctcgagttggagcgcgagcgggac
ggcccggcgtcgaagaagaatccacccaaggacgaagtggacaaggagcggcgcaaggct
cgtcgcgtcgagatcgacgccgagctgaccgcgctcaacggaggcatcctggctggcata
ccgtccgatatcggtccggcggtggcggcgagcacggtggattttttcaccagcgagccg
ggccggcgtttgctgggcaagctggcgaagctgggcatagacccgcagggcacggtggtc
acagccgggcgtttcacgggcaagacgttcgtgctcacgggcacgttgccgacgctgaag
cgcgaggaggccgagcagaagatcctggcggccggcgggaaagtcagcggcagcgtgagc
aagaagacggcctacgtgctggcgggggaggaggccgggtcgaaattggagaaggcgaag
gagctcggcgtcgccatcatcgacgaagctgagtttttgaagatggtgcaggggtag
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integrated database retrieval system
