Octopus bimaculoides (California two-spot octopus): 106867796
Help
Entry
106867796 CDS
T04127
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106867796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obi03041
]
106867796
Spliceosome [BR:
obi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106867796
Complex C
U5 SnRNP specific factors
106867796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EFTUD2
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Motif
Other DBs
NCBI-GeneID:
106867796
NCBI-ProteinID:
XP_052833131
LinkDB
All DBs
Position
27:21309944..21325378
Genome browser
AA seq
1026 aa
AA seq
DB search
MDADLYDEFGNYVGPDLESDGEEDEEEDEDLDDLDADNDEDVDHDDIDEHPDMQVVLHEE
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIAPIKRKKFSVAEQDFVETVYNMEFLADL
MDTPDLIRNVTLCGHLHHGKTSFIDCLMEQTHPGLQRVDDNDLRYTDTLLTEIERGVSIK
STPVTLVMQDTRNKSYLLNVFDTPGHVNFSDELDIPVWVYNTSVCPTVTPWANFFLVNIA
VLRVPTQHPLLVNVLPFMLQVMLNTERLIKHAVQERLSVCVCINKIDRLMQELKLPPTDA
YYKLRHILEEVNTIISMYTDDQENHMVSPILGNVCFASSYYRYCFTLKSFAKIYADTYGG
INIKEFARRLWGDIYFNSKTRRFTKKPPHSTSQRSFVEFILEPMYKIFAQIVGDVDENLP
SVCEELGISLTKEERKINVRPLLRVVMKRFFGEFIGFTDMCVEHIPSPAANAHTKVEHMY
TGPMDSELAESMVQCDSQXPLMIHTTKLYPTPPDATSFHVLGRIMSGMLHANQEVRILGE
NYSLQDEEDSRPGMVGRLWIAEARYKIEVNRVPAGNWILIEGIDQSIVKTSTITDVAGPD
DVYIFRPIKFNTSSVIKIAVEPVNPSELPKMLDGLRKVNKSYPLLNTKVEESGEHIILGT
GELYLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKKNKITMIAEPL
EKGLAEDIENEVVQISWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS
EVDKNLLVSVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAGEPIHRGGGQIIPTA
RRVAYSAFLMATPRMMEPYFFVEVMAPADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIK
AFIPAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQPATHLARE
FMIKTRRRKVRIKRDFSKSTFVAGTLGRWLWGKMLASQSHGFGIHPTMGHLGQVSSVMVT
APINAL
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgatctgtatgatgagtttgggaattatgtcggacctgatcttgaaagtgat
ggagaggaagatgaggaagaagacgaagatttagatgacctggatgcagataatgatgag
gatgttgatcatgatgatattgatgagcacccagacatgcaagttgtcttgcatgaagag
aagaaatattatccaacagcagaggaagtttatgggccagaagtggagactatagtacaa
gaagaggacacacagccactaacagaaccaatcattgctcctatcaaaaggaagaaattt
tctgtagcagaacaggactttgttgagacagtttacaatatggaatttttggctgatctg
atggacacgcccgacctgataaggaacgtgactctctgtggacatctacaccatggcaag
acttccttcatcgattgtttaatggaacagacacatcctggcctccaacgagttgacgat
aacgatcttcgttacacagacacattgctgactgaaattgagagaggggtcagcatcaaa
agcacaccggtcactcttgtgatgcaggacaccaggaacaaatcctatttgctaaatgtc
tttgataccccaggtcatgtgaacttttccgatgagttagacattccagtttgggtttat
aacacgtctgtgtgtcccactgtgactccttgggcaaattttttcttggtaaatatcgca
gtattgcgtgttccaacgcaacatccacttttggtgaatgttttaccttttatgttgcag
gtgatgcttaatacagagagactcatcaagcatgctgtacaagaacgactctctgtctgt
gtttgtatcaacaaaattgatcgactgatgcaggaattgaaactaccacccacagatgcc
tattataaactgcgtcacattttggaggaagtgaacacaattataagtatgtacacagac
gaccaggaaaatcacatggtgtctccaattcttggtaacgtgtgcttcgccagttcctat
tacagatattgtttcacactgaagtcctttgcaaagatctatgctgatacatatggtggc
atcaacatcaaagaatttgctcggcgtctttggggtgacatttatttcaacagcaaaact
cgacgcttcaccaagaaacccccccacagtacatcccaaagaagttttgtggaattcatc
ctggaaccaatgtacaagatatttgctcagattgtcggtgatgttgacgagaatcttccc
agtgtctgcgaggaactcggtatcagcctaacaaaggaggagcgaaagatcaacgtccgt
cccctgctgagagtggtgatgaagcgtttctttggagaatttattggtttcacagatatg
tgtgtagaacacatcccatcacccgctgccaatgctcacaccaaagtggagcatatgtac
acggggccgatggactcagagctggctgaatcaatggtacagtgtgactcccaggnncca
ctgatgatacacacaaccaaactctacccaacgccacccgatgccaccagcttccatgtc
ctgggacgtatcatgagcggaatgctgcatgccaaccaagaagtgcgaatcctaggtgaa
aactactccttgcaggatgaagaggattctcgcccgggaatggttgggcgattgtggatt
gccgaggcaaggtacaagatagaagtgaaccgggtccctgccggtaactggatcctcatt
gaaggcattgaccagtccattgtgaagacgtccacgattactgatgtggctggaccagat
gatgtgtatatattccggcccatcaaattcaacactagctccgttatcaagattgccgtt
gaacctgtcaacccttcagaattacccaaaatgttggacggtttgcgtaaggtcaataag
agttatcctctcctgaacactaaggttgaagaatctggagagcatatcatccttggcact
ggtgaactctaccttgactgtgtcatgcatgacttgagaaagatgtattcggagatcgat
ataaaagtagctgaccccgttgtgtcattctgtgaaactgttgtggaaacctcttcgttg
aagtgtttcgctgaaaccccaaataaaaagaacaagatcacaatgattgctgaaccattg
gagaagggacttgctgaagacattgagaacgaggtcgtccaaatcagttggccccgtaag
agactcggtgaattctttcagaccaaatacgactgggatttgctggccgctcgatccatc
tgggcgtttggccccgatgctactgggcccaacatccttgttgatgacacactgccctct
gaggttgataaaaaccttttggtgtctgtgaaagatagcatcgtacaaggtttccagtgg
gctacaagggaaggtcccttgtgtgatgaacctatccgaaatgtgaaattcaagatcctc
gatgccgtcattgctggggaacccatccaccgtggtggtggacaaattattccaaccgct
cgaagagttgcctattcggcctttttgatggctacaccacgtatgatggaaccctatttc
tttgtagaggtcatggctcctgctgattgtgtctctgcagtctacactgtactggcacga
agaagaggtcatgtgactcaggatgcccctgtaccaggttcgccactttacaccatcaag
gccttcattccagcaattgactcctttggttttgagactgatctcagaacacacacgcag
ggacaagccttctgtctttctgtcttccatcattggcagattgttcccggtgatcccttg
gataaaagtattataatccgaccccttgaaccgcagcctgctacgcatttagctcgggag
ttcatgattaagacacgtcgacgaaaggtacgaattaaaagagatttttctaaatcaact
tttgtggccggaaccttgggaaggtggctgtggggtaagatgcttgcttcccagtcacat
ggtttcgggatccatcccactatgggacatcttgggcaagtgtcttctgttatggtcaca
gccccaatcaatgccttgtaa
DBGET
integrated database retrieval system
