KEGG   Octopus bimaculoides (California two-spot octopus): 106870208
Entry
106870208         CDS       T04127                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
obi  Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018  RNA degradation
obi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106870208
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106870208
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obi03019]
    106870208
   03041 Spliceosome [BR:obi03041]
    106870208
Messenger RNA biogenesis [BR:obi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106870208
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     106870208
Spliceosome [BR:obi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    106870208
 Complex C
  U2 snRNP components
    106870208
SSDB
Motif
Pfam: LSM vATP-synt_E TIG_SUH Peptidase_M16_M YfkB LNS2 DUF150_C
Other DBs
NCBI-GeneID: 106870208
NCBI-ProteinID: XP_014771700
UniProt: A0A0L8IEP8
LinkDB
Position
20:44889534..44894921
AA seq 102 aa
MTDEQEQQPTQTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETV
TTVEIDEETYEEIYKSTKRNIAMLFVRGDGVILVSPPMRTGT
NT seq 309 nt   +upstreamnt  +downstreamnt
atgacagacgaacaggaacagcaaccgacacagacggtagaagagcctttggatttaatt
cgcctcagtttagatgaacgaatttacgtaaagatgagaaatgaccgggaacttcgcggc
cgactacatgcgtatgaccaacatttaaatatgattcttggagatgttgaagaaaccgtg
accacagttgaaatcgatgaagaaacatatgaagagatctacaaatcaacgaagagaaac
attgccatgttgtttgtcagaggagatggagttattcttgtatcacctcccatgcgaaca
ggaacttga

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