Octopus bimaculoides (California two-spot octopus): 106871117
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Entry
106871117 CDS
T04127
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106871117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106871117
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106871117
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
TDP-43_C
RRM_7
RRM_PARP14_3
RL
Motif
Other DBs
NCBI-GeneID:
106871117
NCBI-ProteinID:
XP_014772915
UniProt:
A0A0L8HEQ9
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Position
17:complement(33503508..33526305)
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AA seq
401 aa
AA seq
DB search
MSQYIQVAEDENDEPIEVPTEEDGALLLTTLVAQFPGACGLKYRNPETCGMRGVRLTDGR
LHPPDEGWGNLVYISVFPKDNKRKGDDGLENPTAKTKRLDMQKCSDLIVLGLPWKSTEED
LRNYFSQYGELLMVQVKKDLKSGQSKGFGFVRFVDYEAQLKCISQRHMIDGRWCDVRIPN
SKDGGQQTMNRKVFIGRCTEDMTADDLRSHFGKFGEVIDVFIPKPFRAFAFVTFSNPEVA
QSLCGEDHIVKGISVHISSAVPKNYDKFGDKKGQNQVQPPYNQGYGQGGWGQGNQRGGQN
MGSNMNNMGGLNLGAFQLNPAMLAAAQAMLSSQGGWGPLGLGQGAGDTSNQNSNQSLSSF
NTSGQGANNNSFLGWGGQTSDSGSAQAGGWGQHSKPGGGWN
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgagccagtacatccaagttgctgaagatgagaatgatgaaccaatcgaagtaccaacc
gaagaagatggggcattgcttctcaccacattagtcgctcagttccctggagcctgcggc
ctcaaatatcgcaacccagaaacatgtggcatgcgcggggttcgtctcaccgacggccgt
cttcacccgccagatgaaggctggggaaaccttgtctatatctcggtgttccctaaagat
aacaagcgtaaaggggatgatggcttagaaaatcctactgctaaaaccaaacgtcttgat
atgcagaagtgtagtgacttgatagtgcttggtttgccatggaaaagtacagaagaggac
ttgaggaattacttctctcaatatggagaacttctaatggtgcaggtgaagaaagacctt
aaaagtggccagtccaagggatttggctttgttcgttttgttgattatgaggctcagttg
aaatgcatttcccaacggcacatgattgatggaagatggtgtgatgtcagaatcccaaat
tcaaaggatggaggtcaacaaacaatgaatcgcaaagttttcattggtcgatgcactgaa
gatatgaccgctgatgatctgcgtagccattttggcaaatttggagaggtcattgatgtt
ttcattcccaagccttttcgagcttttgcatttgtaactttctctaatccagaagtcgct
caaagtctttgtggggaggaccatattgttaagggaatcagtgtccatatcagtagcgca
gtcccaaaaaactacgacaagtttggagataagaaaggtcaaaatcaagttcagcctccg
tataaccagggatatggtcaaggtggttggggacagggaaaccaacgtggaggtcaaaat
atgggcagtaatatgaataatatggggggattgaacttgggtgctttccagttgaaccct
gcaatgctggctgctgctcaggccatgcttagtagccaaggtggatggggccctttaggg
cttggccaaggagcaggtgatacctcaaaccaaaacagcaatcagagcttaagtagtttt
aatactagtggtcaaggtgctaataacaatagcttccttggttggggcggccagacctca
gacagcggctcagcacaggcaggtggctggggtcagcatagcaaaccaggtggtggttgg
aactga
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