Octopus bimaculoides (California two-spot octopus): 106871120
Help
Entry
106871120 CDS
T04127
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106871120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106871120
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
106871120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
RRM_1
TDP-43_C
RRM_PARP14_3
RRM_7
RL
Motif
Other DBs
NCBI-GeneID:
106871120
NCBI-ProteinID:
XP_014772917
UniProt:
A0A0L8HG22
LinkDB
All DBs
Position
17:complement(33554494..33559393)
Genome browser
AA seq
395 aa
AA seq
DB search
MSQYIQVAEDENSELIEIPIELDGTLLLSTLSAQFPGACGLKYRNPNTCAVRGIRLSLGQ
LYPPEDGWEDRVYYSVFPKDNKRKSDDGMDSGAIKAKRVNKKCSDLIVLGLPWKSTEEDL
RQYFSQFGELLMVQVKKDLKTGQSKGFGFVRFQDYESQLKCINQRHMIDGRWCDVRIPNS
RDGSQQQVNSKVFVGRCTEDMTEDDLLTYFSKYGEVIDVFIPKPFRAFAFVTFTDPDVAQ
ALCGEDHIVKNVSVHVSSALPKPADKHNSGNSGNWDRRGPQGNYNQGYGQGGWNQGNRNS
NGNMNGPPMNFGNFQINPAMLAAAQAMLSGPGGWGPLGMGQGGGGESNSQNSNQSFGSIG
SGPNNNYLGWGGPAENGQGHSANWGGSLSKSGGWN
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatacatccaagttgctgaggacgagaattcggagctgatagaaattcccatc
gagttagatggtactttgttactgagcaccctctctgcccagtttcctggcgcttgtggt
cttaagtaccgcaaccctaacacatgtgcagtgcgcggtattcgcctcagcctgggacag
ttatatcctcccgaagacggatgggaagatcgggtttactacagtgtctttccgaaagat
aacaagaggaagagtgatgatggcatggacagcggagccatcaaagctaaaagagtcaac
aaaaagtgtagcgaccttattgtattgggcctaccttggaaaagtactgaagaagatttg
aggcaatatttttcacagtttggtgaactgttaatggtgcaggtcaaaaaagatttgaaa
actgggcagtcaaagggctttggttttgttcgattccaagattatgaatcccaattaaaa
tgtatcaaccaaagacacatgattgacgggcgttggtgtgatgtgaggattccaaactcc
agggatggtagtcaacagcaagtaaacagtaaagtgtttgttggccggtgtacagaagac
atgactgaagatgaccttctcacttacttctctaaatatggtgaagtcattgatgtcttt
atccccaaaccattccgggcgttcgcatttgttacattcactgatcctgatgttgctcaa
gctttgtgtggcgaagaccacattgtgaagaatgtcagcgttcatgtgagcagtgcactg
ccgaaacctgcagataaacataatagcggcaactctggcaactgggataggcgtggtcct
caaggcaactataatcaaggttatggacagggtgggtggaatcagggaaaccgcaatagt
aatggcaacatgaatggacccccgatgaattttggcaactttcagataaatccagcaatg
ttggcagctgctcaggccatgcttagtgggcctggggggtgggggccattaggaatggga
caaggtggaggtggagagtctaacagtcaaaatagcaaccaaagctttggtagtattggt
agtggtcccaataacaattatttgggttggggtggccctgcagaaaatggtcaagggcat
tcagcaaattgggggggttcactatcaaaatctggtggatggaattaa
DBGET
integrated database retrieval system
