Dysosmobacter welbionis: EIO64_18090
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Entry
EIO64_18090 CDS
T06030
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
obj
Dysosmobacter welbionis
Pathway
obj03030
DNA replication
obj03410
Base excision repair
obj03420
Nucleotide excision repair
obj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EIO64_18090 (ligA)
03410 Base excision repair
EIO64_18090 (ligA)
03420 Nucleotide excision repair
EIO64_18090 (ligA)
03430 Mismatch repair
EIO64_18090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
obj03032
]
EIO64_18090 (ligA)
03400 DNA repair and recombination proteins [BR:
obj03400
]
EIO64_18090 (ligA)
Enzymes [BR:
obj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EIO64_18090 (ligA)
DNA replication proteins [BR:
obj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EIO64_18090 (ligA)
DNA repair and recombination proteins [BR:
obj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EIO64_18090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EIO64_18090 (ligA)
MMR (mismatch excision repair)
DNA ligase
EIO64_18090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EIO64_18090 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
BRCT_2
Auto_anti-p27
RUBY_RBDX
Nop10p
DUF6742
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QCI60879
LinkDB
All DBs
Position
3542644..3544689
Genome browser
AA seq
681 aa
AA seq
DB search
MDYREEMKQLRDFLNQQSYLYYVLDAPVIPDYEYDRLNRRLEELEAEHPEEITPDSPTQR
VGDKILEGFETYEHPVPLESLQDVFNAEEVSEFLDRMREALGDGAAYSVEPKVDGLSVAL
EYRDGVFVRGATRGDGRVGEDVTENLKTIRAIPMQLPEKLPRLIVRGEVYMSRAVFAEIN
ARRELEGKPLMANPRNAAAGSLRQLDPKICAERKLDIQVFNLQLAEGKTFQNHSETLDYM
ASQHFKVIPHKTLSDPAEIQAEIDRINEERMDYPFDIDGAVIKSDHLADRERLGSTAKFP
KWAVAFKYPPEKKFSVVQDIVVQVGRTGVLTPKAVLSPVRLAGTTVTNATLHNQDFITEK
DIRVGDTVLVQKAGEIIPEILSVDFDKRPEGTVPYTLPDACPVCGAPVVRDEDGAALRCT
GAECPAQLLRNLTHFASRDAMDIDGCGPAVIQQLIDSGLISNAADLYSLHAADVAKLDRM
GEKSAENLIRAIENSKANDLSRLLYGLGIRQVGEKAAKTLAAHFGSMDALMAATEEALTE
IPDVGGITARCIADYFRGDQAKDLIRRLKEAGVNMESTAQPTGDLLAGLTFVLTGELESA
SRKEAGEKLEALGAKVSGSVSKKTGAVVAGEAAGSKLRKAQELGVPVLSEEQYRVLVDEV
PGDKAEILALLGRDEAAKEAE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggactaccgcgaggaaatgaagcagctgcgggactttttgaaccagcagagctatctg
tactatgttctggacgcgccggtgatcccggattacgagtacgaccggctgaaccggcgc
ctggaggagctggaggctgagcaccccgaggagatcaccccggactctcccacgcagcgg
gtgggagacaaaatcctggagggctttgagacctatgagcatccggtgccgctggagagc
ctgcaggacgtgttcaacgcagaggaggtctcggagttcctggatcggatgcgggaggcc
ctgggggacggcgccgcctactccgtggagcccaaggtggacggcctgtccgtggccctg
gagtatcgggacggcgtgttcgtccggggcgccacccggggcgacggccgggtgggggag
gacgtgacggagaacctcaagaccatccgcgccatccccatgcagctgccggagaagctg
ccccggctcatcgtccggggcgaggtctatatgtcccgggcggtgttcgcggagatcaat
gcccgccgggagctggagggcaagcccctcatggccaatccccggaacgccgccgccggg
tccctgcggcagctggaccccaagatctgcgcggagcggaagttggatatccaggtgttc
aacctccagctggcggagggcaagaccttccagaaccactcggagaccctggactacatg
gcctcccagcacttcaaggtgatcccccacaagaccctctccgacccggcggagattcag
gcggagatcgaccggatcaacgaggagcggatggactaccccttcgacatcgacggggcg
gtcatcaagagcgaccacctggcggaccgggagcggctgggctccaccgccaagttcccc
aagtgggcggtggccttcaagtacccgccggagaagaagttctccgtggtccaggacatc
gtggtgcaggtgggccgcaccggcgtgctgacgcccaaggcggtgctgtccccggtgcgg
ctggcgggcaccaccgtcaccaacgccaccctccacaaccaggacttcatcaccgagaag
gacatccgcgtgggggacactgtgctggtgcagaaggcgggggagatcatcccggagatt
ttgagcgtggacttcgacaaacgcccggagggcacggtgccctacacgctgccggacgcc
tgcccggtgtgcggcgccccagtggtccgggacgaggacggcgcggccctgcgctgcacc
ggcgcggagtgcccggcccagctgctgcggaacctcacccacttcgccagccgggacgcc
atggacatcgacggctgcggtccggcggtgatccagcagctgatcgactccgggctgatc
tccaacgccgcggacctgtacagcctccacgccgcggacgtggccaagctggaccggatg
ggggagaagtccgcggagaacctgatccgggccattgagaactccaaggccaacgacctg
agccgcctgctgtacggcctgggcatccggcaggtgggggagaaggccgccaagaccctc
gccgcccacttcggctccatggacgcgctgatggccgccacagaggaggcgctgacggag
attcccgacgtgggcggcatcaccgcccggtgcatcgcggactacttccggggcgaccag
gcgaaggacctgatccgccgcctgaaagaggcgggggtgaacatggagagcaccgcccag
cccaccggggacctgctggcgggattgaccttcgtcctgaccggcgagctggagtccgcc
tcccgcaaggaggccggggagaagctggaggctttgggggccaaggtgtccgggtccgtg
tccaaaaagaccggcgccgtggtggccggagaggccgcgggcagcaaactccggaaggcc
caggagctgggggtgccggttctcagcgaggagcagtaccgggtgctggtggacgaggtc
cccggcgacaaggcggaaatcctggccctgctgggccgggacgaggcggcaaaagaagcg
gaataa
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integrated database retrieval system
