Oryza brachyantha (malo sina): 102711850
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Entry
102711850 CDS
T02995
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr04075
Plant hormone signal transduction
obr04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
102711850
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
102711850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obr03000
]
102711850
Transcription factors [BR:
obr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
102711850
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
102711850
NCBI-ProteinID:
XP_040377585
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Position
1:8076801..8080062
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AA seq
758 aa
AA seq
DB search
MDARAVQGTRLRGRGVASSLSASALSILHSVPGASEAEAAEVPPPPRRQTSPYPTRGVEP
KLLHASASASASFLLFYLRLRLPSERDGAHLTSPRTWRPLHGHLAFGLELVSAIGSRSSR
SFCPSSSFACAARMSDGNDFAELLWENGQAVVQGRRKHPQPAFPPFGFGIGGGSSSRAQE
RQLGGGDAFAKVGAGFGALAMAPAVHDFAPSFGAAHDNNGDDDTVPWIHYPIIDDDDGAA
APAALAAADYGSDFFSELQAAAAAAAAATPPADLASLPASTNRNAPVATACREPSKESHG
GLSVPTTRAEQQPQGAASKLPRPGGGEGVMNFSLFSRPAVLARATLQSAQRPQGTDKASN
GTASNRVESTVVQTASGPRSAPAFADRRAAWPPQPKETPFASTAAAPMAAAINLQHETGR
DRAGRTMPIHKHEARKVPEAATVATSSVCSANGAGSDDLWRPPKRKSQAQTECSASQDED
LDDEPGVVRRSAARSTKRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLD
EAIEYLKTLQLQVQLSLTQMMSMGTGMCIPPMLLPTAMQHLQIPPMAHFPHLGIGLGYGM
GVFDMNTGALPMPPMPGAHFPCPMIPGASPQGLGIPGTSTMPMFGVPGQAIPSPASSVPP
FASLAGLPVRPSGVPPQVSGAMANMVQDQQQGIENQQQQCLNKEAIQGANPGDPQMQIIM
QGDNEHFKIPSSAQTKSSQFSDGTGKGTNARERDGAET
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgagggcggtgcagggaacccggctgcgcgggcgcggcgttgcgtcctcctta
tctgctagcgctttgtccattctccattccgttcccggcgcgagcgaggccgaggccgcc
gaggtcccccccccaccccgcaggcaaacctctccttatcccacacgcggcgtggaaccc
aaacttctccacgcttcggcttcggcttcggcttcctttcttctcttctatcttcgtcta
cggcttccaagcgagcgagacggagctcacctcacctcacctcgcacctggcggccccta
cacggccacctcgcattcggcttggagctcgtctccgcaattgggagtaggtccagtagg
agtttttgcccatcgtcttccttcgcctgtgctgcgcggatgtcagacggcaacgacttc
gccgagctactgtgggagaacggccaggcggtggtgcaaggccggaggaagcacccgcag
ccggccttcccgccgttcggcttcggcatcggcggcggcagcagcagtagagcccaagag
aggcagctcggtggtggcgatgccttcgccaaggttggggccggcttcggcgccttggcc
atggctccggcggtgcacgacttcgctcctagcttcggtgccgcccacgacaacaacggc
gacgatgacaccgtgccgtggatccattacccgataattgacgacgacgacggcgccgcc
gcccctgctgctctggctgcagccgactatggctcggacttcttctcggagcttcaggcg
gcggcagcagcggcggcggccgcgacgccgccggccgatctcgcttctctgccagcttcc
actaacaggaatgctccagttgccaccgcctgcagggaaccctccaaggaaagccacggt
ggcctatcggttcccactacccgagccgagcagcagccacagggcgccgcatccaagctg
cctcggccgggcggcggcgagggcgtgatgaacttctctctcttctcccgcccggccgtc
ctggcaagggcgaccctgcagagcgcgcagaggccgcaaggcaccgacaaggcgtccaat
ggcacggcgagcaaccgcgtcgagtcaacggtcgtgcagacggcgagcgggccaaggagc
gccccggcgttcgccgatcggagggcggcgtggccgccgcagccgaaggagacgccgttc
gcgtccacggcggccgcgcccatggccgcggccattaacctgcagcacgagacgggccgt
gacagagcaggccgaaccatgcctatccacaaacacgaggccaggaaggtacctgaggcg
gcaacggtggcgacgtcgtcggtgtgctccgccaacggcgctgggagtgacgacctctgg
cgcccgccgaagcggaagagccaggcccagacagagtgttcagctagccaagatgaagat
cttgacgatgaaccgggcgtagtgagaagatccgcagccaggagcacgaaacgcagccgc
acagcggaagttcacaacttgtcagaaaggaggagacgggacaggatcaatgagaaaatg
cgcgctttgcaagaactgattcccaactgcaacaagattgacaaagcttcgatgctggat
gaagctatagagtacctcaaaacccttcagcttcaagtacagttgtcattgacacagatg
atgtccatgggaactgggatgtgcattcctccaatgctattgccaacagccatgcagcac
ttgcaaattccaccgatggctcatttcccgcatcttggcataggattggggtacggcatg
ggtgtcttcgacatgaacactggagcgcttccgatgccacccatgcctggtgctcacttt
ccttgcccgatgatcccaggtgcgtcaccacaaggtcttgggatccctggcacaagcacc
atgccaatgtttggagttcctggtcaagcaattccttcgccagcgtctagtgtaccacca
tttgcatctttggctggtcttcctgttaggccaagcggggtccctcctcaagtgtcaggc
gccatggctaacatggtgcaagatcagcagcaaggcatagagaatcaacagcagcaatgt
ctgaacaaggaagccatacagggagcaaatccaggtgatccacaaatgcagatcattatg
cagggtgacaacgagcattttaagataccctcttcagcccaaacaaaaagcagtcaattt
tcagatggtaccggcaaggggaccaacgctagagagagagatggggctgaaacataa
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