Oceanobacillus sp. 143: CV093_04305
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Entry
CV093_04305 CDS
T06339
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ocb
Oceanobacillus sp. 143
Pathway
ocb03030
DNA replication
ocb03410
Base excision repair
ocb03420
Nucleotide excision repair
ocb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CV093_04305 (ligA)
03410 Base excision repair
CV093_04305 (ligA)
03420 Nucleotide excision repair
CV093_04305 (ligA)
03430 Mismatch repair
CV093_04305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocb03032
]
CV093_04305 (ligA)
03400 DNA repair and recombination proteins [BR:
ocb03400
]
CV093_04305 (ligA)
Enzymes [BR:
ocb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CV093_04305 (ligA)
DNA replication proteins [BR:
ocb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CV093_04305 (ligA)
DNA repair and recombination proteins [BR:
ocb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CV093_04305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CV093_04305 (ligA)
MMR (mismatch excision repair)
DNA ligase
CV093_04305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CV093_04305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
RNA_pol_A_CTD
Nlig-Ia
Zn_ribbon_NUD
5_3_exonuc
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGS68139
LinkDB
All DBs
Position
820763..822766
Genome browser
AA seq
667 aa
AA seq
DB search
MDKQQAQDQINALKEVLNQYGYEYYVLDSPSVPDSVYDEKLRELRDLEAEFPEFLTDDSP
TQRIGGAPLDAFKKVQHNIPMMSLGNAFNEEDLRDFVRRASQGTDEPVSFVCELKIDGLA
VSLTYENGKFVRGATRGDGTTGEDITSNLRTIRSIPLSIKLNETLEVRGEAYMPHQSFLS
LNESRLANEEEPFANPRNAAAGSLRQLDPKIAAERNLDVFLYGVGEWNTSTITTHSERLE
KLKELGFKTNSEWKKCSNIEEILEFIEYWTTERPNLSYEIDGIVIKVDNLEQQEALGFTA
KSPRWAIAYKFPAEEAITTLVDIELSVGRTGVITPTAILEPVKIAGSTVGRASLHNEDLI
REQDIRIGDTVVIKKAGDIIPKVVRAVVEKRTGEEKEFEMPNECPACGSEVVRLEGEVAI
RCINPNCPAQLMEGLIHFSSRNAMNIDGLGEKVVIQLFQEKLIHTIADLYRLDREELLRL
ERMGEKSVDNLLRAIETSKENSLEKLLFGLGIRFIGAKAAKTLATEFETMEKLQRATFDE
LVAVDEIGEKMADSVVQYFSEEKVIDLLAELAALNLNMEYKGPKKAEQGSDSIFAGKTVV
LTGKMETYTRNEAKELIESMGGSVTGSVSKKTDILVAGEDAGSKYDKAKKLEITIWDEQQ
LKEAIEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttggataaacaacaagcacaagaccaaattaatgcgttgaaagaagttttgaatcaatat
ggctatgaatattatgttctcgatagtcctagtgttccggattcggtttatgatgaaaaa
ttacgtgaactcagggatttagaagctgagtttccagagtttttaacagatgattcaccg
acacaacgaataggtggagctccacttgatgcgtttaagaaagtacaacataatattccg
atgatgagcttagggaatgcttttaatgaagaggatctacgagattttgtacgacgagcc
tctcaaggtactgacgagcccgtaagcttcgtatgtgaacttaaaattgatggacttgct
gtttcattaacttatgaaaatggaaaatttgttcgaggcgcaacacgtggcgacggaaca
acaggagaagatattacttccaatttgcgaacgattcgcagcatcccactatcgataaaa
ttgaatgagacgcttgaagttcgcggagaagcatatatgccgcatcaatcatttctctca
ttaaatgaaagcagacttgccaatgaagaagaaccgtttgcaaatccgagaaatgctgca
gctggcagtctccgtcaattagatccgaagattgccgccgagcgaaatttagatgttttc
ttatatggtgttggtgaatggaatacgagcacgattacaacccatagtgagcgtctagaa
aaactgaaggaacttgggttcaagaccaactctgaatggaagaagtgctcaaatattgaa
gagattcttgaattcattgaatattggacgacagaacgccccaatctttcctatgaaatc
gatggtatcgttattaaagtagataatctggaacaacaggaagcgttaggcttcacagcg
aaaagtccgcgttgggcaattgcatataagtttccagctgaagaggcaattactacacta
gtggacatcgaattaagcgtcggcagaactggggtgattactcctaccgcaattctagag
cctgttaaaattgctgggtcaacggttggacgtgcctccctgcataatgaagatttaatt
cgtgagcaggatattcggattggtgatacggttgtgattaagaaggctggcgacattatc
ccgaaagttgttcgtgcagtagttgagaaacgaactggtgaggaaaaagaattcgaaatg
ccaaatgaatgtccagcatgtggcagcgaggtcgttcgccttgaaggggaagtagcaatc
cgttgtatcaatcctaattgccctgcacaattaatggaaggcctgattcatttctcttct
agaaatgcaatgaatatcgatggattaggcgaaaaagtagtcatccagcttttccaagag
aaattaatccatacaattgctgatttgtaccggttggatcgcgaggagctcctaagacta
gagcgaatgggtgagaagtcggtcgataatttacttcgggcaattgaaacgtcgaaggaa
aactcactagagaagctgctatttggtttaggaatacgcttcattggagcaaaggctgcg
aagacactagcaacggaattcgagacaatggaaaagctgcaacgggcaacatttgatgag
cttgttgcagttgatgaaatcggtgagaaaatggccgattccgttgtacagtatttttca
gaagaaaaagtaattgatctattagctgaattagcagcacttaatcttaatatggaatat
aaaggtccaaaaaaagccgagcaaggtagtgattctatctttgcaggaaagacggttgta
ctaacaggtaagatggaaacgtacactcgtaatgaagcgaaggaattaattgaatcaatg
ggtggatcggttacaggaagtgtaagcaagaagacagatattcttgttgcaggggaagat
gccggttctaagtacgataaagcaaagaaattggaaattacgatttgggatgaacaacag
ctgaaagaagcaatcgaagggtga
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