KEGG   Oceanicola sp. D3: FHY55_10710
Entry
FHY55_10710       CDS       T06139                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ocd  Oceanicola sp. D3
Pathway
ocd03030  DNA replication
ocd03410  Base excision repair
ocd03420  Nucleotide excision repair
ocd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    FHY55_10710 (ligA)
   03410 Base excision repair
    FHY55_10710 (ligA)
   03420 Nucleotide excision repair
    FHY55_10710 (ligA)
   03430 Mismatch repair
    FHY55_10710 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocd03032]
    FHY55_10710 (ligA)
   03400 DNA repair and recombination proteins [BR:ocd03400]
    FHY55_10710 (ligA)
Enzymes [BR:ocd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     FHY55_10710 (ligA)
DNA replication proteins [BR:ocd03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     FHY55_10710 (ligA)
DNA repair and recombination proteins [BR:ocd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     FHY55_10710 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     FHY55_10710 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     FHY55_10710 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      FHY55_10710 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT Nlig-Ia
Other DBs
NCBI-ProteinID: QDC09687
UniProt: A0A5B8BRP4
LinkDB
Position
2111377..2113632
AA seq 751 aa
MSETTSTTTKDVKSLSPAEAEAELARLAELLNKANAAYHQADAPEMDDADYDALKRRNAA
IESAFPDLKRSDSPSDQVGAAPSETFSKIRHAVRMLSLGNAFDAEDVAEFDRSVRSYLGR
EDGLTYTAEPKIDGLSLSLRYENGKLIQAATRGDGETGENVTANARTIEDIPENLQGAPE
VLEVRGEVYMSHDDFAALNERQEAAGAKRFANPRNAAAGSLRQLDSEITRARPLRFFAYA
WGELSAPLAETQYDAIQRLETLGFSTNPLTARCDGTEALLAHYVQIEQKRATLGYDIDGV
VYKVNDLALQARLGFRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLTPVT
VGGVVVSNATLHNEDYIAGRDAKGGRIREGKDIREGDWVQVYRAGDVIPKIADVDLSKRP
EEATPYSFPTTCPECGSPAIREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLGA
KQVEAFYGDDQLPVKEPADIFTLRQRDAEAFTKLANRDGWGETSAKNLFEAIDEKREIAL
SRLIFGLGIRHVGEVAAQDLARHYTSWEAMAQALDAARPAALAHRKADEAAEAERAAAAE
EGRRAKLAEARAAVAGDVPPEAAEAWADLIGTDGIGPTLALSLSDAFANPDERAAMDRLL
PQLTPLPPEARATGSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSAKTDLLVA
GPGAGSKAKKAADLGVETIDEDGWLSLIGDA
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgtctgagaccacatccaccacaacaaaagacgtgaaatcgctgagccccgccgaggcc
gaggccgagcttgcccggctcgcagagcttttgaacaaggcgaacgccgcctatcatcag
gccgatgcgcccgagatggatgatgccgactatgacgcgctgaaacggcgcaatgcggcg
atcgagtccgcctttcccgacctcaagcgcagcgattccccctccgaccaagtgggcgcg
gccccctccgagaccttctcgaagatccgccacgcggtgcgcatgctctcactgggcaat
gcattcgacgccgaggacgtggccgagtttgaccgctcggtgcgcagctacctcgggcgc
gaggacgggctgacctataccgccgagcccaagattgacggcctgtcgctttctctgcgc
tacgagaacggcaaactgatccaggccgccacgaggggcgatggtgaaaccggcgaaaat
gtcaccgcgaatgcccgcaccatcgaggacataccggaaaacctgcaaggcgcgccggag
gtgctggaggtgcgtggcgaagtctatatgagccacgatgattttgccgcgctgaacgaa
cggcaggaggccgccggcgccaagcgcttcgccaacccgcgaaacgccgcggctggttcg
ttgcggcagctggattccgagatcacccgcgcccggcctttgcgtttcttcgcctatgcc
tggggcgagctcagcgctccgctggcagaaacgcaatatgacgccatccagcggctcgaa
accctagggttttccaccaacccgctcaccgcccgctgcgatggcaccgaggcgctgctg
gcccattacgtgcaaatcgaacaaaagcgcgcgaccttgggctatgacatcgacggcgtt
gtttacaaggtgaacgaccttgccctgcaagcccggctcggcttccgctccaccacgccg
cgatgggccattgcccacaagttccctgctgagctggcctggacccggctcgaaaagatc
gaaattcaggtggggcgcaccggcgccctcagcccggttgcgcggctgaccccggtgacg
gtgggcggcgtggtcgtcagcaatgcgacgctgcacaacgaagattacatcgccgggcgc
gacgcgaagggcggccgcattcgcgagggcaaagacatccgcgagggcgactgggtgcag
gtttaccgcgcgggcgacgtgatcccgaagatcgcggatgtggacctgtcaaagcgcccc
gaagaggcaacgccctacagcttcccgacaacctgccccgaatgcggctccccggcgatc
cgcgaagagggcgatgcggtgcggcgctgcaccggcgggctgatctgcccggcgcaggcg
gtggaaaagctgaagcacttcgtctcccgcgccgccttcgatatcgaggggcttggggcc
aaacaggttgaggccttctatggtgacgaccaactgccggtgaaggagcctgccgatatc
ttcaccctccggcagcgcgacgccgaggccttcaccaagctcgccaaccgggatggttgg
ggagagacgagcgcaaagaacctgtttgaagccattgatgaaaagagagaaatcgcgctg
tcgcggctgatcttcgggctgggcatccgccatgtgggcgaggtggccgcacaggatctg
gcacgccactacaccagttgggaggcgatggcgcaggcgctcgatgcggcccgcccggcc
gcgctggcccatcgcaaggccgatgaggcggcagaggccgaacgcgccgccgccgccgaa
gagggccgccgtgcaaagctggccgaggcgcgggccgccgtggcgggtgacgtgcctcct
gaggccgccgaggcctgggccgacctgatcggcaccgatggcattggccccacgctggcg
ctttcgctctccgacgccttcgccaaccccgacgagcgcgccgcgatggacaggctcctg
ccgcagctcaccccgctgccccccgaggcacgggccaccggcagccccgtggcgggcaag
acggtggtgtttaccggcacgctcgaaaagatgacccgcgccgaggccaaggcccgcgcc
gaggcgttgggggccaaggtttcgggcagcgtcagcgccaagaccgatctgttggtggcg
ggcccgggcgcggggagcaaggcgaagaaggccgcagacctcggcgttgaaaccatcgac
gaagacggctggctttctcttataggcgacgcatga

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