Afipia carboxidovorans OM5 (Goettingen): OCA5_c27150
Help
Entry
OCA5_c27150 CDS
T01617
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ocg
Afipia carboxidovorans OM5 (Goettingen)
Pathway
ocg03030
DNA replication
ocg03410
Base excision repair
ocg03420
Nucleotide excision repair
ocg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OCA5_c27150 (ligA)
03410 Base excision repair
OCA5_c27150 (ligA)
03420 Nucleotide excision repair
OCA5_c27150 (ligA)
03430 Mismatch repair
OCA5_c27150 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocg03032
]
OCA5_c27150 (ligA)
03400 DNA repair and recombination proteins [BR:
ocg03400
]
OCA5_c27150 (ligA)
Enzymes [BR:
ocg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OCA5_c27150 (ligA)
DNA replication proteins [BR:
ocg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OCA5_c27150 (ligA)
DNA repair and recombination proteins [BR:
ocg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OCA5_c27150 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCA5_c27150 (ligA)
MMR (mismatch excision repair)
DNA ligase
OCA5_c27150 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OCA5_c27150 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEI07409
UniProt:
B6JB45
LinkDB
All DBs
Position
complement(2888952..2891084)
Genome browser
AA seq
710 aa
AA seq
DB search
MRKTMAAKSKKPLPSVDQLTKAQAKVEHKRLALEIAMHDERYYQKDAPTVSDAAYDSLRQ
RLNAVEARFPELVTTDSPSQKVGAQPSRAFAKIRHAVPMLSLGNAFSDEEVAEFVARVRR
FLNLGADEPLAVVAEPKIDGLSLSLRYENGELVNAATRGDGFEGEDVTANVRTIKDVPHK
LKGKNIPAVCEVRGEVYMLREDFLTLNKKQADSGDTIFANPRNSAAGSLRQKNVAITASR
PLKFFAYAWGEMSAMPATTQFEMVKWFEKAGFAVNPRMILCRDVEALLRYYREIETERAQ
LSYDIDGVVYKVDRLDWQTRLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTP
VARLAAVTVGGVVVQNATLHNEDEIARKDIREGDTVVIQRAGDVIPQVVSVVTDKRPKHA
KPYSFPHVCPVCGSHAVREEGEAVRRCTGALICPAQAVERLKHFVSRLAFDIEGLGDKQI
HEFYDAKLIMHPVDIFTLAKRDAHATDKLKDREGYGDVSVRNLFAAIDARRRIELNRLIF
ALGIRHVGEGNAKLLARHYGTIENFRAAMAEAAAAQTEEGNPSEAYADLNAIGGVGDIVA
DAVVEFFAEERNVKALNELLHEIEVLPAEQVRADSAVAGKTVVFTGSLTKFTREEAKAQA
ERLGAKVSGSVSKKTDYVVAGEEAGSKLTKARELGVAVLTEDEWLKLIEG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaacgatggccgccaagtcgaagaaaccgcttccctccgttgatcaactcacc
aaggcgcaggccaaggtggagcacaagcggcttgcgctcgaaatcgcgatgcacgacgag
cgctattatcagaaggacgcgccgacggtctccgacgccgcctatgacagtctgcgccag
cgcctcaatgccgtcgaggcgcgtttcccggaactggtaacgacggactcgccctcgcaa
aaggtcggcgcacagccgtcgcgcgcattcgcgaaaattcgtcacgccgtgccgatgctc
tcgctcggcaacgcgttcagcgacgaggaggtggcggagttcgtcgcgcgcgtgcgtcgc
ttcctcaatctcggcgcggatgaaccgcttgccgttgtcgccgaaccgaagatcgacggg
ctgtctctgtcgctgcgttacgagaacggcgaactggtgaatgccgcgacgcgtggcgac
ggcttcgagggcgaagacgttaccgccaatgtccgcaccatcaaggatgtgccgcacaag
ctgaaagggaagaatattccggcggtctgcgaagtgcgcggcgaggtctacatgctgcgc
gaggattttctcacgctaaacaagaagcaggccgattccggcgatacgatcttcgccaat
ccgcgcaattcggcggcagggtcattgcgccagaagaacgtcgcgatcaccgcgtcgcgg
cctctgaaattcttcgcctatgcctggggcgagatgagcgcgatgcctgcgacgacgcag
tttgagatggtgaagtggtttgagaaggcaggcttcgccgtcaacccgcgcatgatcctg
tgccgcgatgtcgaagcgctgctccgatattatcgcgagatcgagaccgagcgtgcgcaa
ctctcctatgacatcgacggtgtcgtctacaaggtcgatcgcctcgactggcagacccgc
cttggctttgtgtcgcgcagtccgcgctgggcgatcgcgcacaaattcgccgccgagcag
gcgaccacggtgctggagaagatcgacattcaggtcggtcgcaccggcgcgctgacgcca
gtggcgcggctcgcggcggtcacggtcggcggcgtcgtggtgcagaacgcgacgctgcat
aacgaggatgagattgcccgcaaggatatccgcgagggcgacacggtggtgatccagcgc
gctggcgacgtgatcccgcaggtggtgagcgtcgttaccgacaagcgcccgaaacatgcg
aagccctattcctttccgcatgtttgcccggtctgcggcagccacgcggtgcgtgaggaa
ggcgaggcggtgcgccgctgcaccggcgcgctgatctgccccgcgcaggctgtggagcgg
ctgaagcatttcgtctcgcggctcgccttcgatatcgaagggcttggcgacaagcagatc
cacgaattctacgacgccaagctgatcatgcatcctgtcgatatctttacgctggcgaag
cgtgatgcacatgcgacggacaagctgaaggatcgcgaaggctacggcgatgtgtcggtg
cgcaatctgttcgccgcgatcgatgcgcggcgcaggatcgagctcaatcgtctgatcttc
gcgctcggcatccgccatgtcggcgagggcaatgccaagctgctggcgcgccattacggc
accatcgagaatttccgggccgcgatggcggaagcggctgcggcgcagacggaagaaggt
aacccctcagaggcctatgccgatctcaacgccatcggcggcgtcggcgatatcgtggcc
gatgcggtggtggagttctttgccgaggagcgcaacgtcaaggcgctcaacgaactgctt
cacgagatcgaggtgctgcccgccgagcaggtgcgcgccgattccgccgtggccggcaag
acggtggtgttcaccggctcgctgacgaagttcacccgcgaggaagccaaggcgcaggcc
gaacggctgggcgcaaaggtgtcgggctcagtgtcgaagaagaccgattatgtcgtggcg
ggcgaggaggcgggctccaagctcaccaaggcgcgcgaactcggcgttgcggtgttgacc
gaagacgagtggctgaagctgatagagggctag
DBGET
integrated database retrieval system
