Oceanihabitans sp. IOP_32: FEZ18_14580
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Entry
FEZ18_14580 CDS
T06249
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
oci
Oceanihabitans sp. IOP_32
Pathway
oci03030
DNA replication
oci03410
Base excision repair
oci03420
Nucleotide excision repair
oci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FEZ18_14580 (ligA)
03410 Base excision repair
FEZ18_14580 (ligA)
03420 Nucleotide excision repair
FEZ18_14580 (ligA)
03430 Mismatch repair
FEZ18_14580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oci03032
]
FEZ18_14580 (ligA)
03400 DNA repair and recombination proteins [BR:
oci03400
]
FEZ18_14580 (ligA)
Enzymes [BR:
oci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FEZ18_14580 (ligA)
DNA replication proteins [BR:
oci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FEZ18_14580 (ligA)
DNA repair and recombination proteins [BR:
oci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FEZ18_14580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FEZ18_14580 (ligA)
MMR (mismatch excision repair)
DNA ligase
FEZ18_14580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FEZ18_14580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
AphA_like
Motif
Other DBs
NCBI-ProteinID:
QFZ55942
UniProt:
A0A5Q0K080
LinkDB
All DBs
Position
complement(3468905..3470908)
Genome browser
AA seq
667 aa
AA seq
DB search
MNIKQQIEELRKDIREHNYNYYVLDKPTISDYDFDIKLKELQALEAKYPEFFDANSPTQR
VGGAVTKNFETLVHEQRMYSLDNSYSKEDLLDWETRIKKLVDGDIQYTCELKYDGASISI
TYENGQLTKAVTRGDGFQGDNVTANVRTIKSVPLQLKGDYPEKFDIRGEIVLPFEGFIKM
NEERIELGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNLTGSNLGIKSQYESLEKA
RAWGFKVPDVAKLANSISEVLEFINYWNTHRHDLPYETDGVVVKVNSLQQQDELGFTAKA
PRWAMAYKFKAEQVSTQLNSITYQVGRTGAITPVANLEPVELAGTTVKRASLHNADQIEK
LDIRVGDQVFVEKGGEIIPKIIAVDLSKRLPNTAPTKFITHCPECHTELVRQEGEAQHYC
PNYNGCIPQIIGRIQHFISRKAMDIEGLGGETVALLVNEGLINDYSDLYTLTKEQILPLE
RMAEKSAENLIAGVAASKQIPFERVLFALGIRFVGETVAKKLAKHYKSIDALALATETDL
VNVDEIGVKIAQSVSAFFKDEKNISILNKLKQYGVQLEMSEEQLKGQTNLLEGQAIVVTG
VFETISRTDLKKLIEDNGGKVSSSISSKTSYIVAGSNMGPSKKQKADKLNIEIVDELTFL
QKLNTQS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatataaaacaacaaatagaagaactacgtaaggacatacgtgaacacaattataat
tattacgtgttggataagccaacaatatccgattacgatttcgatataaaactcaaagaa
cttcaagcgctagaagccaaatatcctgaatttttcgatgccaattcaccaacacaacgc
gttgggggagcggtgactaaaaattttgaaacgttggtgcacgaacaacgcatgtattct
ttagacaattcgtactctaaagaagacttgctcgattgggaaacccgcataaaaaaattg
gttgatggtgatatccaatacacctgcgagctaaaatacgatggcgcttctataagcata
acttacgaaaatggtcaattgacaaaggctgtaacgcgaggtgacggttttcaaggggat
aatgtcacagcaaatgtaagaacgataaaatctgtaccactacagttaaaaggggattat
ccagaaaaatttgatattcgaggtgaaatcgttttaccttttgagggttttattaaaatg
aacgaggaacgtatcgaattgggcgaagaaccctatagaaacccgagaaataccgcatct
ggtagtttaaaattacaagacagtgctgaagtggcaaaacgtcctttagaatgtttgtta
tataatttaacgggatctaatttaggtattaaatcgcaatacgaaagtttggagaaagcg
agagcgtggggatttaaagtacccgatgtcgcaaaacttgccaattctattagtgaagtt
ttagaatttataaattattggaatacgcatagacacgacttaccttacgaaaccgatggt
gtggttgttaaggtaaatagcctacaacaacaagacgaattgggttttacggcaaaagca
ccacgatgggcgatggcttataaatttaaagcagagcaagtttctacacaattaaacagt
ataacgtatcaagtaggtagaaccggagcgataacaccagtagccaatttggaacctgtt
gagttggcgggtacaaccgtaaaacgcgcgtctttgcataatgccgaccagattgaaaag
ttagatattcgtgtaggcgaccaagtatttgttgagaaaggaggcgaaattattccaaaa
attattgcagtcgatttaagtaagcgactaccaaatacggcccccacaaaatttataaca
cattgtccagaatgccatacagaattggtacgacaagaaggcgaagcacaacattattgt
cctaactataatggttgtataccgcaaataattggtcgtattcaacattttatttcaaga
aaagcaatggacattgagggattaggtggagaaacggtagcactcttagttaatgaaggg
cttattaacgattattcagatttgtacaccttaacaaaagaacaaatcctgcctttagaa
cgcatggctgaaaaaagtgcagaaaatttaattgcaggggtagcagcatcaaaacaaatc
ccgtttgaacgtgtattgttcgctttaggaattcgatttgttggggaaactgttgctaaa
aaattggctaagcactataagagtattgatgccctcgctttggcaaccgaaaccgattta
gtgaatgtcgatgaaataggcgtaaaaatagcacaaagtgtttctgcattttttaaagac
gaaaaaaacatttcgattttaaataaactgaaacagtatggagttcagttagaaatgtct
gaagagcaactcaaggggcaaactaatcttttagaaggacaagctattgtggttactggt
gtttttgaaacgatttccagaacagatttaaaaaaattaattgaagataacggtgggaag
gtaagcagttctatttcttcaaaaaccagttatattgtggcaggttctaatatggggcca
agtaaaaaacaaaaggcagataaattaaatattgaaattgttgacgaattaacattttta
caaaaactaaatacacaatcttaa
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