Ochrobactrum sp. EEELCW01: GTN27_07895
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Entry
GTN27_07895 CDS
T07148
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03030
DNA replication
ocl03410
Base excision repair
ocl03420
Nucleotide excision repair
ocl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GTN27_07895 (ligA)
03410 Base excision repair
GTN27_07895 (ligA)
03420 Nucleotide excision repair
GTN27_07895 (ligA)
03430 Mismatch repair
GTN27_07895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocl03032
]
GTN27_07895 (ligA)
03400 DNA repair and recombination proteins [BR:
ocl03400
]
GTN27_07895 (ligA)
Enzymes [BR:
ocl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GTN27_07895 (ligA)
DNA replication proteins [BR:
ocl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GTN27_07895 (ligA)
DNA repair and recombination proteins [BR:
ocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GTN27_07895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GTN27_07895 (ligA)
MMR (mismatch excision repair)
DNA ligase
GTN27_07895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTN27_07895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_PADR1
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QTN03096
LinkDB
All DBs
Position
1:complement(1641897..1644059)
Genome browser
AA seq
720 aa
AA seq
DB search
MTDTPVEKLTEPEAASELERLAREIAHHDELYHANDRPEISDAEYDALKRRNDAIEARFP
HLVRTDSPSLRVGTAPVSKFAQVVHARPMLSLGNAFSDDDVRDFVGSVYRFLGHLPDNSI
AFTAEPKIDGLSMSIRYENGILVSGATRGDGTTGENVTANIRTIAEIPNRLPAGAPSVVE
VRGEVYMAKSDFLALNEQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAWGE
MSDMPADTQTGMVEVFREWGFPVNPLTKRLHGADELLAHYRAIGLERAQLDYDIDGVVYK
VDRLDLQTRLGFRSRSPRWAIAHKFPAEQATTILRGIDIQVGRTGALTPVARLEPITVGG
VVVTNATLHNEDYIKGIGLKGERIRADEHDIRVGDTVIVQRAGDVIPQIVDVVLEKRKAD
ATPFVFPHECPVCHSHAVREEGEAVYRCTGGLTCAAQAVERIRHFVSRNAFDIEGLGEKQ
VEFFFHAEDDSLKIKSPADIFTLQKRQADSPLKKLENIEGFGATSVKKLYDAINDRREIA
LHRFLFGLGIRHVGEVNAKRFARAYLSYTAFEKAALEAVPPKEGDRTDKGNDAWQELIAV
EGIGSIVAEAVVDFYAEPHNVQVLAALLAEVTPLDEEARVATGSPVEGKTVVFTGSLERM
SRDEAKAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLAKASELGIEVIDEDAWFTLVGEE
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatactcccgtcgaaaaactgactgaacctgaagccgcttcagaactggaacgg
ctggcgcgtgaaattgcgcatcatgatgagctctatcatgccaatgaccggccagagatt
tcggatgccgagtatgatgcgctgaagcggcgtaacgatgcgattgaagcgcgcttcccg
catctggtgcggacagacagcccgtccttgcgtgttggtacagcacctgtttccaaattt
gcgcaggttgttcatgcacgcccgatgctttcgctcggcaatgcgttttcagacgatgac
gtccgcgatttcgtgggcagtgtctatcgctttctggggcatctgccggataattccatc
gcatttaccgctgaaccgaagatcgacgggctttccatgtcgatccgctatgagaatgga
attctggttagcggtgcgacgcgtggtgacggcacgaccggcgagaatgtgacggcgaat
atccgcaccattgccgaaattccgaaccggcttccggctggagcgccttccgtcgttgaa
gtacgcggtgaggtctatatggctaaaagtgacttcctcgcgctcaacgaacagatggcc
gctgaaggcaagcagacctatgtgaacccgcgcaacacggcagcaggttccctgcgccag
ctcgatgccaaggtgacggcgagccgcaagctgaaattctttgcctatgcctggggtgag
atgtcggacatgcctgccgatacgcagacgggtatggtcgaggtttttcgcgaatggggt
ttcccggtcaatccgctgacgaagcggcttcacggtgcagatgaattgcttgcgcattac
cgtgccattggccttgagcgcgctcagctcgactacgacattgacggtgtcgtctataag
gttgatcggctcgatctgcagacgcggctcggtttccgctcgcgcagcccacgatgggcc
attgcgcacaagtttccggcagaacaggctacgacgatcttgcgcggcatcgacattcag
gtcgggcgcaccggcgcgctgacgccagtggcgcggctggagccgatcactgtcggtggc
gtggtcgtgaccaatgcgacgctgcacaacgaggactatatcaagggtatcggcctcaag
ggtgagcgtattcgtgctgatgagcatgatattcgcgtcggcgatacggtaatcgtgcag
cgcgcaggtgatgtgatcccgcagattgtcgatgtcgtgctggagaagcgcaaagccgat
gcaacgccgtttgtgttcccgcatgaatgcccggtctgtcacagccatgctgtgcgtgaa
gagggcgaggcggtctatcgttgcaccggcggcctgacctgtgctgcgcaggcggtcgag
cgcattcgtcatttcgtatcgcgcaatgcgttcgatattgaaggccttggcgagaagcag
gtcgagttcttcttccatgcagaagatgacagcctgaagatcaaatcgcctgccgatatc
ttcacgctgcaaaagcgacaggcggattcgcctctcaagaaactggagaacattgaaggt
ttcggcgcgacttccgtgaagaagctttatgatgcgatcaatgatcggcgcgagattgcc
ctgcatcgctttctgttcggccttggtatccgtcatgttggtgaggtgaatgccaagcgc
tttgcgcgcgcctatctgtcttataccgcctttgaaaaagcggctctggaagcggttccg
ccaaaagaaggcgaccgcaccgacaagggtaacgacgcctggcaggaattgattgcggtt
gagggcatcggttccatcgttgcagaggcagtcgtggatttttatgcggagccgcataac
gtgcaagtgttggcggctcttctcgccgaagtgacgccgcttgacgaggaagcacgtgtt
gccaccggttcgccggtcgaaggcaagacggtggtatttaccggcagtctggaacgtatg
tcgcgcgatgaggcgaaagccatggccgagcgctatggggcaaagacggctggatcggtt
tcgaaaaagaccgatcttgtggtggccggaccgggcgctggttccaaactcgccaaggcg
tccgagttgggtatcgaagtaatcgatgaagacgcctggttcacactggtcggagaagaa
taa
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