Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364577
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Entry
139364577 CDS
T10872
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139364577
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
139364577
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Zip
GPHH
Motif
Other DBs
NCBI-GeneID:
139364577
NCBI-ProteinID:
XP_070957531
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All DBs
Position
13:34636805..34701180
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AA seq
1903 aa
AA seq
DB search
MVALLPPTGTEVFRRFTLESLAEIERRMAEEAEEQERKKALNIEVAEEDLPKPAVDLEAG
KALPFIYGDPPPELFNTPLEELDPFYKSHKTFIVITKGNTIFRFNAEPACYILTPFSILR
RGSIKILIHSLFSMFIMLTIMSNCVFMTMSDPPAWSKTVEYVFTGIYTFEATIKVLSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLAVFALVGLQLFMGNLKQKCVYWPPVEWRINSTNMDNITMA
FNDTSGFNDVMDYNGTNSSNSTWDFKAYIDDKVNHYFLPGMLDPLLCGNASDAGNCPEGY
TCMKAGGNPNYGYTSYDSFGWAYLALFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFL
GSFYLINLILAVVAMAYAEQNEATMAEAKEKEEEYAMIMVQLKERREAEVKERHDRHHEH
HEHAEIAGSQTSLSGRTSKKEKGEKADEEVADDEACTSSSLYSEAIKDSNGGLMISANAN
KVLTDQESAVVLKRASGPKGSKDQLEVVGLQKKTPSSSSVYSQDDMDDLEEELRPCPPCW
YTCSDIFLKWNCCVPWVTFKKWMYFIVMDPFVDLGITICIVLNTMFMAMEHYPMTPEFEE
VLSVGNLVFTGIFTAEMVLKLIAMDPYYYFQVGWNIFDSIIVTMSLVELGLANVEGLSVL
RSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE
CVCKISLDCELPRWHMHDFFHAFLIIFRVLCGEWIETMWECMEVAGQGMCLIVFMMVMVI
GNLVVLNLFLALLLSSFSGDNLAAPEEDGEMNNLQIATGRITRGIDWAKAYVIQQFCIII
GKQPTEDGDGADGNGGSNGDVDGLPKGSLALKNIISSDNPKADLELTMLDVWIDDVNPSG
FLTNDNLTLDVPIAKMESDDDEDDISEEEEGEGANGDAKEDTELKKPIAPDNASSICSTV
DNPPEVEEEEEEEADTTNPENCWTEKCIGRCPCLDFDITAGKGKTWWNFRKTCFLIVEHN
YFETFIIFMILMSSGALAFEDIYIEQRRTIKIILEYADQVFTYVFIIEMLLKWVAYGFQA
YFTNAWCWLDFLIVDVSLISLTANILGYAELGPIKSLRTLRALRPLRALSRFEGMRVVVN
ALVGAIPSIFNVLLVCLIFWLIFSIMGVNMFAGKYYYCFNTTSEERFSADVVNNKTECYQ
LMEGNDDVRWMNAKVNYDNVAMGYLSLLQIATFKGWMDIMYGAVDSRFVEDQPIYEDNVY
MYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKK
PQKPIPRPQNKFAGLIFDLITQQFFDIFIMVLICLNMVTMMVETDGQSKEKEDILFLINL
VFIIVFTTECILKLIGLRQYFFSVGWNIFDFVVVILSIVGLLLADLIEKYFVSPTLFRVI
RLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKE
AGIDDMFNFETFGNSIICLFMITTSAGWDGLLSPILNSRAPDCDPDVENPGTDVRGNCGS
PGLGICFFCSYIIMCFLVVVNMYIAIILENFNVATEESGDPLCEEDFEMFYETWEKFDPD
ASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDILLALTTEVLGE
SAEMDAMKESMEEKFMANNPSKVSYEPITTTLRRKQEEVAAVVIQRAYRKHLLRRSLKLA
SYKYREKKALTKEDEVPPETEGMIAIRMNKLYGSQQSLGVDETVVDMDSHEKRESKELTE
TQPPVETTEEPLPVELQNEIILHSAPFVIPASIRISQLKESDV
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccctgctccctcccacaggcaccgaagtgtttcgccgcttcacccttgagtcg
ctggcggagatcgagaggcggatggccgaggaagcagaggagcaggagagaaaaaaggcc
ctgaacattgaggtggcagaggaggacctgccaaagccagccgtcgacctggaggccggc
aaggccctgccattcatctacggagacccgccacctgagctgttcaacacgcctctggag
gaactggatcctttctacaaatcacacaaaacctttatcgtcatcaccaaagggaataca
atcttcaggttcaatgctgagcctgcctgctatattctaacacccttcagtattctcagg
agaggatccatcaaaattctcatacattcattatttagcatgttcatcatgttaacaatc
atgtccaactgtgtgttcatgacgatgagtgaccctccggcatggagtaaaactgttgaa
tatgttttcactggtatctatacctttgaggcaacaattaaagtgttgtccagaggcttc
tgtgttggagatttcacattccttcgagatccatggaactggctggattttatggtgatc
agcatggcgtacctcaccgagttcgttgacctgggcaacgtgtctgccctcaggacgttc
cgtgtgctccgggcccttaaaacaatcactgtaattcccggtctgaaaaccattgtgggc
gctttgatccagtcagtgaagaagctggccgatgtgatgatcctaacagtgttctgcctg
gctgtgttcgctctggtcggccttcaactgttcatgggaaacctgaagcagaagtgtgtt
tactggccccctgtggaatggcgtataaactctaccaacatggacaacatcactatggcc
ttcaacgacaccagtggttttaatgacgtcatggactacaatggcacaaacagcagcaac
agtacgtgggacttcaaggcatacatcgacgataaagtgaaccattacttccttcctgga
atgttagaccctcttctttgtggaaacgcttctgatgctggaaattgccctgaaggatac
acgtgtatgaaggccggagggaatcccaactatggatacacaagctacgacagttttgga
tgggcttaccttgccctatttcggctcatgacacaggacttctgggaaaatctattccag
ctgactcttcgctcagcagggaaaacctatatgattttctttgtggtggtgatcttcctg
ggctcgttctacctgatcaacctgatcctggctgtggtggccatggcgtatgccgagcag
aacgaggccaccatggccgaggccaaggagaaggaggaggagtatgccatgatcatggtg
cagctgaaggaaaggagagaagcagaggtcaaagagagacatgacaggcatcatgaacac
catgaacacgctgaaattgctggcagtcagacgtcactgtccggtagaacatctaagaaa
gagaaaggtgaaaaggcagatgaagaggttgctgatgatgaggcgtgtacgtcctccagc
ctttatagcgaggctataaaggactccaatggaggcctcatgatcagtgccaacgccaac
aaggtcctgacagaccaggagtctgctgttgtgttgaagagggccagtggacccaagggg
agtaaggaccagctggaagtagtaggcctgcagaagaagacacccagttcatccagtgtc
tacagccaagatgacatggacgatttggaggaggaactgagaccttgtccgccttgctgg
tacacgtgttcagacatcttcctgaaatggaactgctgtgtgccctgggtgactttcaag
aagtggatgtacttcatagtgatggacccattcgtggacttgggtatcaccatctgcatt
gtactcaacaccatgttcatggccatggagcactaccccatgacgccagagtttgaagaa
gtgctgagtgtggggaacttggtcttcacaggaatcttcacagcagagatggtgctgaag
ctcatcgccatggatccgtactactacttccaggtcgggtggaacatcttcgacagcatc
attgtgacaatgagcctggtggagctggggctggctaacgtcgaaggtctatccgtgctc
cgttccttccgtctgatgcgtgttttcaagctggccaaatcctggcccacactcaacatg
ctaatcaagatcatcggtaattcagtgggcgcactgggtaacctcaccctggttctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctcttcggcaagagctacaaagag
tgtgtctgcaagatctccttggactgcgagctgccccgctggcacatgcatgacttcttt
cacgcttttctcatcatcttccgggtgctgtgcggagagtggatcgagaccatgtgggaa
tgcatggaggtggccggacagggcatgtgtctcattgtcttcatgatggtcatggtcatc
ggtaacctagtggtgttgaacctcttcttggccttgctgctgagctcgttcagcggtgac
aacctggcggctccagaggaggacggggagatgaacaacctgcagatcgccaccggcagg
atcaccagaggcatcgactgggccaaggcctacgtcatccagcagttctgcattatcata
gggaagcagcctacggaggatggagatggggctgacggtaatgggggtagtaatggggat
gtggacggcctcccaaagggcagcttggctttgaaaaatataatctccagtgacaaccca
aaggctgatttggagctcacaatgcttgacgtttggatagacgatgtcaacccaagtgga
tttcttacaaatgacaatttgaccctggatgtacctattgccaaaatggagtcggatgat
gatgaggatgacatctctgaagaggaagaaggagaaggtgcaaatggagatgctaaagag
gatactgagttaaagaaacctattgcaccggacaatgcctcttcaatatgcagcacagtg
gacaatccccctgaagtggaagaagaggaggaagaagaggcagacaccaccaaccctgag
aactgctggaccgagaaatgcattggacgatgcccgtgccttgattttgacatcaccgcg
ggcaaaggaaagacttggtggaacttcaggaagacatgcttcctcattgtggagcacaac
tactttgagaccttcatcatcttcatgatcctgatgagcagcggcgctttggcttttgaa
gacatatacattgagcagcgcaggaccataaaaatcatcctggaatatgctgatcaagtc
ttcacctacgtgttcattattgagatgctcctgaagtgggtggcttacggattccaggcc
tacttcacaaacgcatggtgctggctggacttcctcattgtggatgtgtctttgattagc
ttaacggctaacatcctgggctatgctgaacttggaccaatcaaatctcttcgaacttta
agggccttgcggcccctccgcgccctgtccagatttgagggaatgagggtggtggtgaat
gctctggtaggggctattccttccatcttcaacgtgcttttagtgtgcctcatcttctgg
ctcatcttcagcatcatgggtgtaaacatgtttgctgggaagtactactactgcttcaac
accacgtctgaggagaggttctctgctgacgttgtgaataacaagaccgaatgctatcaa
ctaatggagggtaatgatgacgtgcgctggatgaatgcaaaggtcaactatgacaacgtg
gccatgggctacctctccctcctgcaaatagcaacgtttaaaggatggatggatataatg
tatggcgctgtggattcacgttttgtggaagaccagcccatatatgaggataatgtttac
atgtacatctactttgtcatattcatcatctttggatccttcttcaccctgaatctcttc
attggtgtcattatcgacaacttcaaccaacaaaaaaagaagtttggagggaaagacatt
ttcatgacagaggaacagaagaaatactacaatgccatgaaaaagcttggttccaagaag
ccacagaaacccattcctagaccccagaacaaattcgcaggccttattttcgacctgatc
acccaacaattcttcgacatcttcatcatggtgctgatctgcctcaacatggtaacgatg
atggtggagacggacggccagagcaaggagaaggaggatatactcttcctcatcaacctg
gtgtttatcatcgtcttcaccacagagtgtatcctcaagttgatcggactgcgacaatat
tttttttccgtcggatggaatatttttgattttgtcgtcgtcattctctccatcgttggt
ttactgctggcggacctcatagagaagtattttgtctcacctacccttttccgtgtcata
agactggccaggattggtcgagttctgagactcatccgaggagctaaaggcatccggacg
ctgttgtttgccctgatgatgtcacttcctgctctcttcaacattgggctcctgctcttc
cttatcatgtttatcttctccattttcggaatgtccaactttgcgtatgtcaagaaggag
gccggaatagacgatatgttcaattttgaaacttttggcaacagtataatttgtctgttc
atgatcacaacctcagccggttgggatggtctcctctcacccattctaaatagtagagct
ccggactgtgacccggacgtggaaaatcccggcacagatgtaagaggcaactgcggcagc
cctggtttgggaatttgttttttctgcagctacatcatcatgtgtttccttgttgtggtc
aacatgtacattgccattatcctcgagaacttcaatgtggccacagaggagagtggcgac
cctctgtgtgaggaagacttcgagatgttctacgagacctgggagaagttcgaccctgac
gcgtcacaattcatcgcctacgacattttgtcggagttctgtgacacgcttaaagacccg
cttaggatccccaaacccaacgcaatcaagctgatcaccatggaccttcccattgtccct
ggggataagatccactgtctggacatcctgctggcgctaaccacagaggtgctgggagag
tcagcggagatggatgccatgaaagaaagcatggaggagaagttcatggccaacaacccc
tctaaagtgtcatacgagccaatcaccaccaccctgaggcgaaagcaggaggaggtagca
gctgttgttattcagagagcctatcgtaagcatctgctgagacgttcattgaaactcgct
tcctacaagtaccgcgagaagaaagcgttaaccaaggaggacgaagtgccgccagagacg
gagggaatgattgccatcaggatgaacaaactgtatggaagccaacagtcactcggagtg
gatgaaacagttgtagatatggattctcatgaaaaacgggagagcaaagaactgacagag
acacaacctcctgtggagactactgaagagccgctgcctgtggagcttcagaacgagatc
atcttgcactctgccccctttgtcatcccggcctcaatccgtatctcacagctaaaagag
tccgatgtttga
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