Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364709
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Entry
139364709 CDS
T10872
Name
(RefSeq) integrator complex subunit 1-like isoform X1
KO
K13138
integrator complex subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139364709
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
139364709
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
INTS1_INTS2-bd
INTS1_RP2B-bd
INT1_R3
INTS1_R4
Cnd3
CBP1_cbp8
HTH_RNase_II
Cnd1
Motif
Other DBs
NCBI-GeneID:
139364709
NCBI-ProteinID:
XP_070957792
LinkDB
All DBs
Position
13:40840418..40859334
Genome browser
AA seq
2207 aa
AA seq
DB search
MMNRPKPTTIRRPSAAKPSGHPPPGDFIALGSKSGGESKAPAVLLKPASTLPTDRKRETS
SSLPSSSGLSGLVKRPKISSTPPVSALGRLADVAAVDKRAISPSIKEPSVVPIEVPPAVL
LDEIENAEQDGNDDRIEGVLCGAVKQLKMNRAKPDITLYLSLMFLAKIKPNLFATEGIIE
ALCSLLRRDASINFKAKGNSLVSVLACNLLMAAYEEDENWPEIFVKVYIEDSLGERIWVD
SSHCKNFVDNIQTAFSTKMPPKSMLLQLQTDTGRSGGDISAGSSPHPSTPDEDDSQTELL
IAEEKLSPEDDGQVMPRYEELSESVEDYVLDVLKDQLNRRQPMDNVSRNLLRLLTATCGY
KEVRLMAVQRLEMWLQNPKLTRPAQDLLMSLCMNCNSHGADDMEVISNLIKIRLKPKVIL
NHYMLCVRELLNAHKDNLGTMVKLVIFNELSNARNPNNMQVLHTLLQHSPEQAPKFLAMV
FQDLLTNKDDYLRASRALLREIIKQTKHEINFQSFCLGLMQERKEATYVDMEFKERFVIQ
VTDLLTCSMMLGITAQVKEAGVAWDKGEKKNLDGLRSFQNNIAAIQRDAVWWLHTVVPTI
AKVPSKDYIHCLHKVLFTEQPETYYKWDNWPPESDRNFFLRLCSEVPLLEDTLMRILVIG
LSRDLPLGPADAMELADHLVKRAAGVQSDGTTSATAMDLDVLRVERIQLIDAVLNLCTYH
HPENIQLPAGYTPPNLAIATLYWKAWLLLLVVAAFNPQQIGLAAWDGYPTLKMLMEMVMT
NNYSYPPCTVADEETKTEMINRELQVSQREKQEILAFESHLAAASTKQTITESNSLLLSQ
LTSLDPQGPPRKPPPAVQEQVKSLNHSLRLGHLLCRSRNPDFLLNIIQRQASSQSMPWLA
DLVQSSEGSLDVLPVQCLCEFLLHDAADGNLPIEDDEEGESKEQRAKKRQRQQKQRQLLG
RLQDLLLGPKADEQTTCEVLDYFLRRLSSSQVASRVLAMKGLSLVLTEGGLKDGEERDQP
MEEDSRDAELLPGYQWLLQDLPKLPLFDSVRGMTSTALQQAIHMETDPQTISAYLIYLSQ
HAPVEEQASHNDLALDVARLIVERSTIMNSLFSKYSCRPESDAVLSALISIFSSYIRRMR
KTKEGEDLYSWSESQDQVFLRWTTGETATMHILVVHAMVILLTLGPPKEESDFFNLLDIW
FPDKKPLPTAFLVDTSEEALLLPDWLKLRMIRSEVARLVDAALQDLEPQQLLLFVQSFGI
PVSSMSKLLQYLDQAVSHDSQTLEQNIMDKNYMAHLVEVQHERGATGGHTFHGLLSSSLP
PRRDSTEVNRAKVTVETPSGSLKMRANQIPVIGPEDDLTGMLLQMFPLKVDLRRPSPPPR
PLSLAMQQALAQELVRARQGGHPQQGGVAVRLLQALAALLSSAHAGALVMAMNRSHALSC
PMLRQLHLYQRLVSQDVAFSSLFFKAVMEMMTWLENPAVEAGPLRALLKSFAGQYSQKHR
LTDVRTGFLHLAEALAYRRDSEVAVRAIIATLKAGERCNAEPKLIGKVLQGLVEGKSPYL
EELLALLMTIGTETGAGSTTAGPVAMVIALLLQETDERAVKMEVDTNNSSSEVTKTGSSS
GLLVDWLGLLDPEVTSVCPDLQRKLLFALNKGKGTPSYRPYLLALLTHQSNWTTLHQCIS
ALLSKQQDQRLDPSSALDFLWACSHIPRIWQGRDQKTPQKQTDTFVLRLNPEELISLVDL
IMSESELNSRGDSSPPANTPDKAKSTLDQTSCSLIQSRLPLLHSCCHGDLERVKKVSEYL
INCTKKWGDSVMSKRCQNLLLQLYLHFPEVIQHVTLPDATLSSEGAADGTTCKHDVLVHR
LVTLLGDTGDTKSAENRMSDANLACRKLAVSHPVLLLRHLPMIGALLHGRIHLNFQEFRS
QNHLTFFSNVLAILELLQPLVFHSEHQRALQDCLLSFMKILQNLRRPRMHPLAVFSKYVQ
FIQKYITHDAASAIPYLQKHSDILQGLSSEHPDLLLKSLLAGLTLPVKTGSSDSSAEDRD
DESSSGSLPMVSISASVPLTAADMTKYLKKISRGEAIEDVLEVLTEVEDKSKRNPEIIQY
FTNDLRRLMSSTEELCRNMAFSLALRCIQNNPCTAADFLPTFMYCMGSGNFDVVQTALRN
LPEYVLLCQEHADILLHKAFLVGIYGQIDTSSMISESMKVLHMEATT
NT seq
6624 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatcgtcccaagcctacaacgattaggcggcctagtgctgcgaaaccctccggt
caccctcctccaggggatttcatagcattggggtcaaagagtggcggagagtccaaagca
cctgcagttctccttaaaccagcgtccaccttacccactgaccgtaaacgagagacctcc
tcgtcacttccatcctcctctggcctgtccggcctagtgaagcgccccaagatctcctct
acccctccggtcagcgccctaggacgattggctgatgtggcagcagtggacaaaagggct
atatcgccttcgatcaaggagccctcagtggtgcccatagaagtccccccagcagtgctc
ctggatgagattgagaatgcagagcaggatggaaatgatgatcgcattgaaggggtgctc
tgtggagctgtcaaacagctgaagatgaaccgggccaaacctgacataacactatacctc
agcctcatgttcctggccaagattaagcccaatctctttgccactgaaggcattattgag
gccttgtgcagtctccttcgccgggatgcctccatcaacttcaaagcaaagggcaacagt
ctggtgtctgtgctagcctgcaacctgctgatggcagcctatgaggaggatgagaactgg
ccagagatctttgtcaaagtgtacattgaggactctttgggggagcgaatttgggtagac
agttcccattgtaagaattttgtggacaatatccagactgccttcagtaccaaaatgccc
ccaaagagtatgctgctgcagttgcagactgacactggccgctccggtggagatatcagt
gcagggagcagtcctcacccctccaccccagatgaggatgacagccagaccgaattgctg
attgctgaggagaaacttagccctgaagatgatggacaagttatgccaaggtacgaggag
ctgtctgagagtgtggaggactatgttctagatgtcctgaaagaccagttgaaccgcagg
cagcccatggacaatgtgtcccgtaacctgctgcgtctgcttactgccacctgtggctac
aaggaggtgcggcttatggctgtgcagaggctggagatgtggctgcagaatccaaagctg
acccgtccagctcaggaccttctcatgtctctctgtatgaactgcaactcccatggagcg
gacgacatggaggtgatctccaacctcatcaagatccgcctgaaacctaaagtcatcctc
aatcactacatgctctgtgtcagggagctactgaatgcacacaaagacaacctgggaacc
atggtgaagctggtgatcttcaacgagctgtccaatgccaggaaccccaacaacatgcaa
gtccttcacacactgctccagcacagcccagagcaggcccctaagttcctggccatggtg
ttccaggacctgctgaccaataaggatgattacctgcgtgcctctcgagccttgctgaga
gagatcatcaaacagaccaagcacgagatcaacttccagtccttctgcctgggtctaatg
caggaaaggaaggaggccacctacgttgacatggagttcaaagaacgctttgtgatccag
gtgacagacctgctcacgtgctccatgatgctgggcatcacagctcaggtcaaggaggct
ggcgttgcgtgggacaaaggagagaagaagaatctggatggtctgagatcctttcagaat
aatatcgctgccattcagagggatgctgtgtggtggcttcacactgttgttcccactatt
gccaaagtgccatccaaggactatatacactgtcttcacaaggtgcttttcacggagcaa
ccagagacctactacaagtgggataactggccccctgagagcgacagaaatttcttcctg
cggctgtgctctgaagtgcctctgctggaggacactctaatgcgcatcctggtcatcgga
ctgtcccgtgacctgcctctgggcccggccgacgccatggagttggcggaccacctggtg
aagagggcagccggggtccagtccgatggtacaacatctgcaacagcaatggatctggat
gttttgagagtggaacggatccaactgattgacgcagtgctgaacctgtgcacctaccac
cacccagagaacattcagctgcctgcgggctatactcctccaaacctggcgatagccacg
ctctactggaaagcgtggctcctgctacttgtggtggccgctttcaatccacagcaaata
ggcttggctgcctgggacggctatcccacactgaaaatgctcatggagatggtcatgaca
aataactactcctatcctccgtgtacggtggccgatgaggagaccaagaccgagatgatc
aacagggagctgcaggtgtcccagagagagaagcaggagatcctggccttcgagagccac
ctggcggctgcctccaccaagcagaccatcacagagagcaacagcctgctgctgtcccag
ctcaccagtctggacccacagggcccccctcgcaaacccccacccgcagtccaggagcag
gtgaagagccttaaccactcccttcgcctgggtcacctcctctgtcgctctcgcaaccct
gacttcctgctcaacatcatccagagacaggcctcctctcagtcaatgccctggctggct
gacctggtgcagtccagtgaggggtccttggacgtgctgcccgtgcagtgcctgtgtgaa
ttcctgcttcacgatgctgcagatggcaacttgcccatcgaggatgacgaggaaggagag
agcaaagagcagagagccaagaaaagacaaaggcaacaaaagcagaggcagctccttgga
cggctgcaggatctgctgttgggtcctaaagctgacgaacagaccacgtgtgaggtgttg
gactacttcctgcgccgcctcagctcttctcaagtggcgtcaagagtcctggctatgaag
ggtctgtcgctggtgctgactgaggggggtctgaaggatggagaggagagggaccagccc
atggaggaggactccagagatgctgagctcctgccagggtaccagtggctcctgcaggac
ctccccaagcttcccctgttcgacagcgtccgggggatgacctccaccgctctgcagcag
gccatccacatggagacagacccacagaccatcagcgcctacctcatctacctgtcccag
catgcaccagtggaggagcaggcatctcacaatgaccttgctctggatgtggcccgtctg
attgtcgagcgctccaccatcatgaacagcctgttctccaagtactcctgccggcccgag
tcagacgctgtgctctcagccctcatctccatcttctccagctacatcaggaggatgagg
aagaccaaagagggagaggacctctacagctggtcagaatctcaggaccaagtgtttctg
cgttggaccacaggggagacggccaccatgcacattctggtggtccatgccatggtcatt
ctcctgacgctcgggccacccaaagaggagagtgacttcttcaacctcctggacatctgg
ttccccgacaagaaacccctccccaccgccttcctggtggacacctctgaggaggccctg
ctgctacctgattggttgaagctgaggatgatccggtcagaggtcgcacggttggtggat
gcagcgctgcaggatctggagccccagcagctgctgctgtttgtccagtcgtttggcatc
cctgtgtccagtatgagtaaactgctgcagtacctggaccaggctgtatcccacgactca
cagacactggaacagaacatcatggacaagaactacatggctcatctggtggaggtgcag
catgagcgaggtgccacaggggggcacactttccacgggttgctcagctcctctctccct
cctcgcagagatagtactgaggtgaacagagccaaagttactgtggaaactcctagtggc
tccttgaagatgagagccaatcagatcccagtgattgggcctgaggatgacctcaccggc
atgttgcttcagatgttccctctaaaggtggacctccgcaggcccagcccccctccccgg
cccctctccctggccatgcagcaggctctggcacaagagctggtgcgtgccagacagggg
gggcacccccagcagggtggggtggcagtgcgtctcctacaggccctggctgctctgctc
agctctgcccacgccggggccctcgtcatggccatgaaccgcagccacgccctgtcctgc
cccatgctgcgccagctacacctctaccagcggctggtgtcgcaggacgtggccttctcc
tctctcttcttcaaggctgtcatggagatgatgacatggttggagaatccggccgtggag
gcagggcccctgcgggccctgctcaagtcctttgctggacagtattcccagaagcaccgg
ctcactgatgttcgtacaggcttcctccacctggctgaggccctggcttatcggagggac
tccgaggtggccgtgagggccataatcgccacactgaaggcaggggagagatgtaacgca
gagccgaaactgataggcaaagtgttacaggggctagtggaggggaagtctccatatttg
gaggaactgcttgccttgctaatgactattggaacagagacgggggccggctctaccacc
gcaggccctgttgccatggtgatagcgctgcttctccaggagactgacgagcgagccgtg
aaaatggaggtggatacaaacaacagcagctctgaggtaacaaagaccgggtccagctca
gggctgcttgttgattggctgggacttcttgaccctgaggtcacatctgtgtgcccagac
cttcagcggaagctgctctttgctctcaacaagggtaaaggaactccctcctacagacca
taccttctggcattgctgacccatcagtccaactggacaactcttcatcagtgcatcagt
gctcttctcagcaagcagcaagaccagcgactggacccatcttctgctctggacttcctg
tgggcctgcagtcacatccctcgtatctggcagggccgggaccagaagaccccacagaaa
cagacggatacgtttgtcctgcgtttgaacccggaggagcttatcagtctggtggacctc
atcatgtcagagtctgagctcaacagccgcggcgactcctcgccccctgccaacaccccc
gacaaggccaagagcaccctggaccaaacctcctgctccctcatccagtcacggctgccc
ctgctccacagctgttgccatggcgacctggagagagtgaagaaagtctcggaatacctc
atcaactgcacaaagaaatggggagacagtgtgatgagtaagcggtgccagaacctcctg
ctccagctctacttgcacttcccagaggtcatccagcacgtgaccttacctgacgccacc
ctgagcagcgagggggctgccgacggcaccacatgcaagcacgacgtcctggttcaccgt
ctggtcacgttgctaggcgatacgggagacacaaagtcagctgagaaccggatgtcagac
gctaacctggcctgcaggaagctggctgtgtcccacccggtcctcctcctcagacacttg
ccgatgatcggagcgcttctccacggacgcatccacctcaacttccaggagttccggagc
cagaaccacctgacattcttcagcaacgtgctggccatcctggagctgttgcagccgtta
gttttccacagtgaacaccagagggcgctgcaggactgcctgctctccttcatgaagatc
ctgcagaacctcaggagacctcgtatgcatccattggccgtcttcagtaaatatgtgcag
ttcattcagaagtacattacccacgatgcagcatcagccattccctatctacagaagcat
tctgatatcctacaggggctctcgtcagagcaccctgacctgctgcttaagtccctgctg
gctggcctcaccctgcctgtgaagactggctcctctgacagctctgctgaggacagagat
gatgagtcgtcctctggatccctgcccatggtcagtatctcggcctccgttccactgact
gcagctgacatgaccaagtacctgaagaagatctccaggggagaagccatcgaagacgtg
ctggaagttctgaccgaggtggaggacaagtccaagaggaatcctgagatcatccagtac
ttcactaatgacctgcggagactgatgagttctactgaggagttgtgccgtaacatggcc
ttcagcctggccctgcgctgcattcagaacaacccgtgtactgcagcagacttcctgccc
accttcatgtactgtatgggcagcgggaactttgacgtggtgcagacagcgcttaggaac
ctgccagaatacgtgctgctctgtcaagagcatgcagacatcttactccacaaggccttc
ttggtggggatctatgggcagattgacaccagctctatgatctctgagtccatgaaggtc
ctgcacatggaggcaacaacatga
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integrated database retrieval system
