Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368236
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Entry
139368236 CDS
T10872
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139368236
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
139368236
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
ATP-synt_B
IQCJ-SCHIP1
GPHH
Motif
Other DBs
NCBI-GeneID:
139368236
NCBI-ProteinID:
XP_070963006
LinkDB
All DBs
Position
16:complement(23877888..23979449)
Genome browser
AA seq
1903 aa
AA seq
DB search
MAPLLPPTGADAFRRFTPESLAEIERLMEEKRIAAEVEGYVGDGPSEPSKDLEAGKSLPM
IFGDAPTEMLNTPLEDIDPFYKAQKTFIVITKGNTIFRFNAESACYILSPFNHLRRGAIK
ILIHSLFSMFIMITILSNCFFMTMSDPPSWSKTVEYVFTGIYTFEASCKVLSRGFVVGPF
TFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALVQS
VKKMVDVMILTVFALAVFALIGLQLFMGNLRNKCVRWPILNSTVFDDYNSTLSLDATMGF
GETENSTVPVDFKEYISNIENHYYLEGSLDALLCGNSSDAGKCPEGFTCIKAGRNPNYGY
TSYDSFGWAFLSLFRLMTQDYWENLFQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVV
AMAYDEQNEATLKEAQDKEEEFQRLLEQYRIQAQEQADAAAGSQATLTSRKELSHHSGSY
GGSADDEQSLGDDVIKDCNGRIVPRLAIVPVSSESESVPEDELKEDSMLHLEQPGLKNRS
ASAVSVLTTVMEELEDAQKPCPPGWYKFADIFLKWDCCVPWVWLKKWLLFIVMDPFVDLG
ITICIVLNTLFMAMEHYPMSPEFDHMLSVGNLVFTGIFTAEMVFKLCAMDPYYYFQVGWN
IFDSIIVTFSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNL
TLVLAIIVFIFAVVGMQLFGKSYKECVCKIATDCELPRWHMHDFFHSFLIVFRILCGEWI
ETMWDCMEVAGAGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSSDDDGEMNNLQI
AIGRINWGIDWVKASVRHMVLQLLGKKATGDKEGGEGIEGNPEKETFALNHLDTCQDSKM
ADGMTNCVDGLQADGEMSLNVPIAQGETDFENDDDYSGSFTSDEENGQGDHLKLLGAVGD
ESSVCSTVDYVPEPEPVEEEEEEEPEPEEPEACFTDGCIARWPCLTFDVSQGRGKKWWNL
RRTCFTIVEHDYFETFIVFMILLSSGALAFEDIYIERRRTIKIILEYADKVFTYVFIIEM
LLKWVAYGFKTYFTNAWCWLDFLIVDVSLVTLGANWMGYSELGPIKSLRTLRALRPLRAL
SRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPI
TEVNNRSDCLALQHATQEARWVNVKVNYDNVGLGYLSLLQVATFKGWMDIMYAAVDSREV
EEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGDDIFMTEEQKKYH
EAMKKLGSKKPVKPIPRPTNMIQGAVFDFITQQFFDIFIMVLICLNMVTMMVETDDQSAE
KENVLYKINLAFIVVFTGECLLKMFALRHYFFTIGWNIFDFVVVILSVAGIMLSDIIEKY
FVSPTLFRVIRLARIGRVLRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFG
MSNFAYVKKQAGIDDIFNFQTFGSSIICLFEITTSAGWDGLLLPILNSGPPDCDPDIENP
GSDVRGNCGNPGMGIMFFCSYIIMSFLVVVNMYIAIILENFNTAQEESGDLLCEDDFVMF
DETWEKFDLEGTQFIEYAKLSEFCDTLQEPLRIAKPNRIKLISMDLPLVTGDKIHCLDIL
LAVTQEVLGEGVEMTAMKVSIEAKFNMNNPTTDSYEPITTTLRRKEEEAAAVIIQRAYRK
HLLKRSILHASFMRRSKRQIRREENEEPPETEGLLVRKMNVLYGSDLDLAAEMELAGLRA
QPISAPLVSNRSSDLPKQTQTTRPEPGRPLLLVVPVEVTSEVVLHSAPVTSDPPLDLPEQ
TQPTGLEPTWPVPAGPNLLVVPIEVTPYLCSRESIDSLRESIV
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggcacccctgctccctcccacaggcgctgatgcgttccgccgcttcaccccggaatcc
ctggcagagattgagaggctcatggaggaaaagagaatagccgcggaagtagaggggtac
gtaggtgatgggccgtcggagcccagcaaagacctggaagccggcaagagtctgcccatg
atctttggagacgccccaacggagatgcttaacacaccactggaggacatagaccccttc
tacaaagcacagaagacctttatcgtgatcaccaaaggaaacacaatcttcaggttcaat
gctgaatcagcttgctacattctaagccccttcaatcatcttagaagaggagccattaaa
attctcatacattcgttatttagcatgttcatcatgattaccattctgtcgaactgcttt
tttatgacgatgagcgacccaccgtcatggagtaaaactgttgagtatgtttttactggt
atttatacctttgaggcctcatgcaaagtgttgtcaagaggctttgttgtcggccctttt
acattccttcgagatccatggaattggctggatttcatggtgatcagcatggcgtacgtc
acagagtttgttgatctaggcaacgtgtcagcccttaggacgttccgtgtactccgagcc
cttaaaacaatcactgtgattcctggattgaaaaccatcgtgggcgccctggtccagtct
gtaaagaaaatggtagacgtgatgatcctcactgtgttcgccctggccgtgtttgcgctc
atcggcctgcaactcttcatgggaaatttgcgcaacaagtgtgtccgatggcccatcctc
aactcaacggtgttcgacgattacaactccaccttgtcgcttgacgccaccatggggttt
ggcgaaacagaaaattccactgttcctgtcgatttcaaggagtacatcagcaatatagag
aaccactactatttggaaggtagtctggatgctcttctctgcggaaacagctctgatgct
gggaagtgcccagaaggattcacgtgcataaaggctgggagaaaccccaactacggctac
accagctacgactccttcggctgggccttcttgtccctcttcagactcatgacgcaggac
tactgggagaacctgttccaactgacacttcgagcagcggggaagacgtacatgatcttc
tttgtgctggtcatcttcctgggttccttctacctcatcaacctcatcctggccgtggtt
gccatggcctacgacgagcagaatgaggccactctgaaagaggcgcaggataaggaggag
gagtttcagaggcttctggagcaatacaggatccaagcccaggagcaagctgatgctgct
gctggaagtcaggcgaccctgacaagtcggaaagagcttagtcatcactctgggtcatac
gggggctctgcggatgacgagcagagcctcggagatgatgttatcaaggattgtaatggg
agaatcgtgccccgtctggccatcgttccagtgtcctctgagtcggagtcggttccagag
gacgagctcaaagaggacagcatgctccacctggagcagccaggcctgaagaacagatcg
gcgagtgctgttagtgttctcaccaccgtcatggaggagctggaagacgcccagaagcct
tgtccacccggctggtacaagtttgccgacatcttcctgaagtgggactgttgcgtgccc
tgggtatggttgaagaagtggttgctctttattgtgatggaccccttcgtggacctaggc
atcaccatctgcatcgtgctcaacaccctcttcatggccatggagcactaccccatgagc
ccagagtttgaccacatgctctccgtggggaacctggttttcactgggatcttcacagca
gagatggtcttcaagctttgcgccatggatccgtactactacttccaggtcggctggaac
attttcgacagtatcattgtcacgttcagtctggtggagttaggtctagccaatgtccaa
ggcctgtccgttctcaggtctttccgtttgctgcgtgtcttcaaactagccaagtcgtgg
cccacgctcaacatgctgatcaagattattggcaactctgtgggcgctctgggcaacctg
accttggtgctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctctttggc
aagagctacaaggaatgcgtgtgtaagattgccaccgactgcgagttgccacgttggcac
atgcacgacttcttccactcattcctcatcgtgtttcgcatcctgtgcggggagtggatc
gagaccatgtgggactgtatggaggtggccggagccgggatgtgcctggtggtcttcatg
atggtcatggtcatcggaaacctggtggtgctgaacctcttcctggccttgctgctcagc
tcattcagtggagacaacctgtccagtgatgacgacggtgagatgaacaacctccagatc
gccatcggcaggatcaactggggcatcgactgggtgaaagcctctgtccgccacatggtc
ctgcagctactgggcaaaaaggccaccggggacaaggaagggggtgaggggatcgaagga
aaccccgaaaaggagacctttgcactaaaccacttagacacgtgccaggattccaagatg
gccgacgggatgaccaactgtgtggacgggcttcaggcagacggcgagatgagcctcaat
gtgcccattgcccagggggagacggactttgagaacgatgatgactacagtgggtctttt
acatcagatgaagaaaatggacaaggtgatcacttgaagttgttgggtgcagtgggtgac
gagtcctcggtgtgcagcacggtggactatgtacctgaaccagagcctgtggaagaggag
gaagaggaggagccagagccagaggaaccagaagcttgcttcactgatggctgtatcgct
cgatggccgtgtctgacatttgacgtctctcagggcagaggcaagaagtggtggaacctc
cgcaggacctgtttcaccatcgtggaacacgactactttgagaccttcatagtcttcatg
atcctcctaagcagtggagctctggcttttgaggatatttacattgagaggagaagaact
atcaaaatcatcctggagtatgcagacaaagtcttcacctatgtctttatcattgagatg
ctcttgaaatgggtggcgtacggcttcaagacctacttcaccaacgcttggtgttggctg
gacttcctaattgtggatgtttccttagtcactttaggagctaactggatgggctactct
gaacttggaccaatcaagtctcttagaacactcagggctctaaggccacttcgagccctg
tcaagatttgagggaatgagggtggtggtaaacgctcttgtcggcgccatcccctccatc
ttcaatgtgctgctggtgtgcctcatcttctggctcatcttcagcatcatgggggtcaac
ctgtttgccggaaagttctaccgctgcatcaacaccaccacggaggagctgttccccatc
accgaggtcaacaacaggagcgactgccttgccctgcagcacgccacccaggaagcccgc
tgggtcaacgtcaaagtcaactacgacaacgtgggcttgggctacctctctctgctgcaa
gtggccacatttaaaggctggatggacatcatgtatgctgccgtggactctcgagaagtg
gaggagcagccctcgtatgagatcaacctctacatgtacatctactttgtcatcttcatc
atcttcggctccttcttcaccctcaatcttttcattggtgtcattattgacaatttcaac
cagcaaaagaaaaagtttggtgatgacatctttatgacagaggagcagaagaaatatcat
gaagccatgaagaaacttggctcgaagaagccagtgaagcctatcccaaggcctacgaac
atgattcaaggcgctgtgtttgacttcatcactcagcagttctttgacatcttcatcatg
gtcctcatctgcctcaacatggtcaccatgatggtggagacggacgaccaaagcgcggag
aaggaaaatgtcctttacaagatcaacctggccttcatcgtcgttttcaccggcgagtgt
ctgctcaagatgtttgcccttcgccattacttcttcaccatcggatggaatatttttgat
tttgtcgtggtcatcctgtccgttgcgggtataatgctgtcggacatcatagagaagtac
tttgtgtcacccaccttgttcagggtcatcaggctggctaggataggcagggtcctgcgt
ctcatcaaaggtgccaagggcattcggacgctcttatttgcgttgatgatgtcactccct
gctctgttcaacatcggcctcctgctcttcctcatcatgttcatcttctccatattcggc
atgtccaactttgcctacgtcaaaaaacaggcgggcatcgacgacatcttcaatttccag
acgttcggcagcagtattatctgcctgtttgagatcaccacctctgcgggttgggatggt
cttctgctgccaattctaaacagcggtcctccagactgtgacccagacattgagaacccg
ggctcggacgttcggggcaactgcggcaacccaggcatgggtatcatgttcttttgcagt
tacatcatcatgtccttcctggtggtggtcaacatgtacatcgccatcatcctggagaac
ttcaacacggcccaagaggagagcggggacctgctgtgcgaggatgactttgtgatgttc
gacgagacctgggagaagttcgaccttgagggcacgcagttcatcgaatacgccaagctg
tcagaattttgtgacaccctgcaggaacccctgcgtatcgccaagcccaaccggatcaag
ctgatctcgatggacctgcccctggtcacgggcgataagattcactgcctggacatcctg
ctggccgtcacccaggaggtgctgggagaaggggtggagatgacggccatgaaggtgagc
atcgaggccaagttcaacatgaacaaccccacgaccgactcctacgagcccatcaccacc
acgctgcggcgcaaggaggaggaggcagcagccgtgatcatccagcgggcttaccgcaag
caccttctcaagcgctccatcctgcatgcctccttcatgcgccgctccaagaggcagata
aggcgggaggagaacgaggagcccccggagacggagggacttctggtgcgaaagatgaac
gtgctctatgggagcgacctggaccttgccgcagagatggaattggctgggttgcgagcg
caacccatatcggcccctctggtgtccaatcggtcatcggacctccccaagcaaacccag
accaccaggccggagcctggcagaccactcctcttggtggtccccgttgaggtcaccagt
gaggtggtgttacactcagcccctgtgacgtctgatccgccattggacctccccgagcaa
acacaacccacagggctggaacctacctggccggtgcctgctgggccaaacctcttggtg
gtccccatagaggtcaccccctatttgtgtagccgtgagtcaatagacagcctgcgagag
tcgattgtataa
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