KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371139
Entry
139371139         CDS       T10872                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-U alpha chain-like
  KO
K06752  MHC class II antigen
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145  Phagosome
ocla04514  Cell adhesion molecules
ocla04672  Intestinal immune network for IgA production
ocla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    139371139
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    139371139
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    139371139
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139371139
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ocla04147]
    139371139
Exosome [BR:ocla04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   139371139
  Exosomal proteins of epithelial cells
   139371139
  Exosomal proteins of breast milk
   139371139
SSDB
Motif
Pfam: MHC_II_alpha C1-set Ig_3 Ig_2 I-set ig
Other DBs
NCBI-GeneID: 139371139
NCBI-ProteinID: XP_070967330
LinkDB
Position
17:complement(55429067..55435285)
AA seq 242 aa
MSLCCLNMKTSMIVLILCCQVYAEDKVLHTDIYISGCSDSDGVDMYGLDGEELWYADFNK
KEGVVALPPFADQMTFPGFYELAVGNLGVCKANLAVAIKAYKNPPETIDPPHSSIYPRDD
VELGVKNTLICHVSGFHPAPVRVRWTRNNQNVTEGVRLSTPYPNTDFTLNQFSSLSFTPE
EGDIYGCTVEHKALTEPLTRIWEPEVSQTSVGPAVFCGVGLTLGLLGVATGTFFLIKGNQ
CN
NT seq 729 nt   +upstreamnt  +downstreamnt
atgtctctctgttgtctgaacatgaagacctctatgattgtcctcatcctctgctgtcag
gtgtatgcagaagacaaagttctgcatactgatatatatattagtggatgcagtgattca
gatggagtggatatgtatggactggatggtgaagagttgtggtacgcagacttcaacaaa
aaggagggagtggtggctctgcctccgtttgcagatcagatgaccttccctggattttat
gaactggctgtaggtaatctgggtgtatgcaaagcaaacctggccgtagctataaaagct
tacaagaacccaccagagacaatagaccctcctcacagcagcatctaccccagggatgat
gtggaactgggggtgaagaacaccctcatctgccacgtcagtgggttccaccctgcacct
gtcagagtcaggtggaccaggaacaatcagaatgtgaccgagggagtgcgtctcagcacc
ccctaccccaacactgatttcaccctcaaccagttctccagtctgagcttcaccccagag
gagggagacatctatggctgtactgtggagcacaaggcccttactgagcccctgacacgg
atctgggaacctgaggtgagccagaccagtgtgggtcctgctgtgttctgtggagtgggt
ctgactctggggctgctgggagtggctaccggaacgttcttcctcattaaagggaaccag
tgcaactga

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