KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372769
Entry
139372769         CDS       T10872                                 
Name
(RefSeq) tumor necrosis factor-like
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010  MAPK signaling pathway
ocla04060  Cytokine-cytokine receptor interaction
ocla04150  mTOR signaling pathway
ocla04210  Apoptosis
ocla04217  Necroptosis
ocla04350  TGF-beta signaling pathway
ocla04620  Toll-like receptor signaling pathway
ocla04621  NOD-like receptor signaling pathway
ocla04622  RIG-I-like receptor signaling pathway
ocla04625  C-type lectin receptor signaling pathway
ocla04920  Adipocytokine signaling pathway
ocla05132  Salmonella infection
ocla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    139372769
   04350 TGF-beta signaling pathway
    139372769
   04150 mTOR signaling pathway
    139372769
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    139372769
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    139372769
   04217 Necroptosis
    139372769
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    139372769
   04621 NOD-like receptor signaling pathway
    139372769
   04622 RIG-I-like receptor signaling pathway
    139372769
   04625 C-type lectin receptor signaling pathway
    139372769
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    139372769
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139372769
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    139372769
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ocla04052]
    139372769
   00536 Glycosaminoglycan binding proteins [BR:ocla00536]
    139372769
Cytokines and neuropeptides [BR:ocla04052]
 Cytokines
  Tumor necrosis fators
   139372769
Glycosaminoglycan binding proteins [BR:ocla00536]
 Heparan sulfate / Heparin
  Cytokines
   139372769
SSDB
Motif
Pfam: TNF NTF2_YvbJ Ig-like_POM152
Other DBs
NCBI-GeneID: 139372769
NCBI-ProteinID: XP_070968669
LinkDB
Position
18:complement(64996103..64998347)
AA seq 242 aa
MAGDCSRVMLDVESGPVYPATSVTLVREKSTHRWRLCGALLAMALCVSAALFVTWHAKRP
DQVEEVDELQHTLRQLSVNRKAAIHLEGEYNGTGKYKTTVEWTDDEGQANSQGGLKLNNN
EIVIPQPGLYFVYSQVSFRVSCKADPKHPNNQEMVHLSNTVKRWSPSYGTEDDKEYQTLL
NSVRTVCKKSSNSEASEGQWYNAVYVGAVFNLEKGDMLQTVTENRPHLESGHGKNFFGVF
AL
NT seq 729 nt   +upstreamnt  +downstreamnt
atggcaggtgattgcagcagagtgatgttagacgtggagagtggccctgtgtaccctgca
acgagcgtgaccctggtacgggagaagtccacacaccggtggaggctgtgtggtgccctg
ctggccatggcactgtgtgtctcagctgcacttttcgttacctggcacgccaagagacca
gatcaggtcgaggaagttgatgaacttcagcatacactgagacaactctctgtaaacaga
aaggctgccattcatctagaaggtgagtacaacggcactggaaaatacaagaccacagtg
gagtggacagacgatgagggccaggcaaactcacaggggggtcttaaactcaacaacaac
gagattgtgatcccccagccgggcctatacttcgtctacagccaggtctctttccgcgtc
agctgcaaggccgaccccaagcaccctaacaaccaggagatggttcacctgagtaacacg
gtcaagcgctggtccccaagctacggcaccgaagacgacaaggagtaccagacgctgctc
aactctgtacgcaccgtgtgtaagaagtcttccaacagcgaggcgagcgaaggacagtgg
tataatgcagtgtatgtgggagccgtgttcaacctggagaagggagacatgctccagaca
gtcacagagaacaggccccatctggagagtggtcatgggaaaaacttctttggcgtgttc
gccttgtga

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