Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374189
Help
Entry
139374189 CDS
T10872
Name
(RefSeq) otoferlin-like
KO
K19949
otoferlin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Membrane trafficking [BR:
ocla04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
139374189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139374189
NCBI-ProteinID:
XP_070971306
LinkDB
All DBs
Position
19:26705837..26743305
Genome browser
AA seq
1800 aa
AA seq
DB search
MKKSRSHKSDHGKGGRGDEAAILETEDLDFMGGMGGGGGPDPDTISLASVTAVTTNVSNK
RSKPDIKMEPSAGRPMDFQVSVTVIEARQLVGLNMDPVVCVEIGDDKKYTQMKESTNCPY
YNEYFVFDFHVPPDVMFDKILKLSVIHSKNLLRSGTLVGSFKLDVGTVYSHPEHQFFHKW
ALLSDPDDITAGCKGYIKCDIAVVGKGDNIKTPHKATETDEDDVEGNLLLPEGVPAERQW
ARYYVKIYRAEGLPKMNTSIMANVKKAFIGENKDLVDPYVQILFAGQRGKTSIQKSSYEP
IWNEQIVFTEMFPPLCKRMKVQIRDSDKVNDVALGTHFIDLRKIANDGDKGFLPTLGPAW
VNMYGSTRSYTIMDEHQDLNEGLGEGVSFRARLLVSLGVEILDTSSPDIMSSTEVQVEGV
PNISESATGKVEEFFLFGVFLEATMIDRKIGDKPISFEVTIGNYGSEIDGVTKPKSGSGK
RSGGDGDEEESELIQGSSDEEEGDDNDLVSVSSTPPMKPVITDRNYFHLPYFERKPCIYI
KSWWQDQRRRLYNANIMDNIADKLEEGLNDVQEVIKTEKAYPERRLRGVLEDLGNGCSQF
LTLANKDQNQTGRTKLDKERLKSCMRELESIGQQAKTIRTQVKKNTVRDKIKLVQNFLQK
LRFLADEPQHSIPDVYIWMMSNNKRIAYARVPSKDILYSGVDEETGKDCGKVKTIFFKLP
GKKGFGAAGWTVQAKTEIYLWLGLNRQRKDFLSGLPNGFEENKMLKGPGSQSAPPISLTY
TMKQIFQLRVHMYQARSLFAADSSGLSDPFARVFFSTHSQVTEVLNETLCPTWDQLMVYD
NVELFGEVGELRDDPPIIVIEIYDQDTVGKAEFMGRTFAKPITKMADEHYGHPRFPPQLE
YYQIYRGNCAAGEMLAAFELLQIGPHGKADLPPIDGPTDMDRGPILPVPLGIRPVLSKYR
IEVLFWGLRDLKRVNLVAVDRPRVDIECAGKGVQSSLIQNYKKNPNFGTLVKMFEVDLPE
NELLHPPLNIRVVDCRAFGRYTLVGNHAVTTLRKFIYRAADKHANNLNTQEEIIVNYEPE
PTIKKMETMVKLDSGSDAVVKIEEDEKGGKKKKRKKGGDEVEEEEFDESMLDWWSKYFAS
IETLMEILKAQEAAMADAEEKEDQDIAAEGGEIKPDDSLVKGKRGKGKKEKKRAGPGDIP
EKKKHNINELQVYPKELENEFDNFEDWLHTFNLFRGKAGDDDDQNMADEERIIGKFKGSL
CMYKVPVSDEMQREMGFDSNMGMFQNIPTNDPINVLVRVYIIRATDLHPADINGKADPYI
AIKLGKSDIKDKDNYISKQLNPIFGKSFDIEATFPIDSTLTVSVYDWDLVGTDDLIGETK
LDLENRYYSKHRAICGIPSKYAIHGYNVWRDPLKPTQILAKLCKEGKLDGPHYGPGGRVK
VANRVFVGPTEIEDENGLKKQTDEHLALTVLKHWEDIPRVGCKLIPEHVETRPLLNLDKP
GIEQGRIEMWVDMFPKDMPAPGPAIDISPRKPKKFELRVIIWNTDEVILEDDDIFTGEKS
SDIFVRGWLKGQQEDKQDTDVHYHSLTGEGLFNWRFIYPFDYLQAEEKIVISKKESMFAW
DETEYKIPARLNLQVWDADHFSADDFLGAIELDLNRFPRGAKTAKQCSINMVLNEKDIPM
VSIFKQMRIKGWWPFLARDENDEFELTGKVEAELQLMTAEEAEKNPVGEGRNEPEPLEKP
NRPDTAFLWFLMPFKAIKNLICNQYFWLTIKLVVALLLVLVLGLFIYSMPGYMAKKLMGV
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatcacgtagccataagtcagaccacggaaaaggaggaagaggcgatgaggca
gccatcttggagacagaggacctggacttcatgggagggatgggagggggagggggccct
gaccccgacaccatctccctggcctcagtcacagccgtcaccactaatgtctccaacaag
agatcaaaaccagacattaagatggaacctagtgccgggagaccaatggatttccaagtt
agtgttaccgtcatagaggccaggcagctagtagggctgaacatggatccagtggtctgt
gtggagatcggagacgataagaagtacactcagatgaaggagtcgacaaactgcccatac
tacaatgagtattttgtctttgacttccacgtcccacctgatgttatgtttgacaagatc
ctgaagttgtcggtaatccactccaagaacctcctgcgtagtgggactctggttggctct
ttcaaactggatgtaggcaccgtctactcgcatccagaacaccagtttttccacaaatgg
gcccttctctctgaccctgatgacatcactgccgggtgcaaaggttacattaaatgtgac
attgccgtcgtggggaaaggagacaacatcaagactccacacaaggccaccgaaaccgat
gaagatgacgtagaaggtaacctcctgttacctgagggggttcccgcggagcgtcagtgg
gctcgctactatgtgaagatctacagagctgagggccttcccaagatgaacaccagcatt
atggctaatgtcaagaaggctttcattggggagaacaaggaccttgtggacccttatgta
caaatactcttcgctggccagagggggaaaacgtctatccagaagagcagctacgagcca
atctggaacgagcagatcgtcttcactgagatgtttccaccgctctgcaaacgcatgaag
gtccagatccgagactcggacaaagtgaacgacgtggccctcggaacacacttcattgac
ctgagaaagatcgccaatgatggagacaaaggcttccttcccaccctgggtccggcttgg
gtgaacatgtatggctccactcgtagctacaccatcatggacgagcaccaggacctgaac
gagggtctgggggagggggtgtccttcagagcccgcctgctggtcagcctgggtgtggag
atcctggacacctcctccccggatatcatgagctccaccgaggtgcaggtggagggggtg
cctaacatctcagagagcgccacagggaaagtagaagagttcttcctcttcggggtgttc
ctggaggccaccatgattgacaggaagatcggggacaaaccaatcagcttcgaggttacg
atagggaactatgggagcgaaattgacggcgtgaccaaacccaagtcgggtagcgggaaa
aggagtgggggagacggagatgaagaggagtcagagctgatccaaggctccagtgatgaa
gaggagggggatgataatgacctggtctccgtgtcctccaccccgcccatgaaaccggtc
atcaccgacagaaactatttccacctgccgtactttgagaggaagccgtgtatttatatc
aagagctggtggcaggaccagagaagaagactgtacaatgccaacatcatggacaacatt
gcagataaactggaggagggtctgaacgatgttcaggaggtcattaagacagagaaggcc
tatccggaacgcagactgagaggggtcctggaggatctcggcaacggatgcagtcaattt
ctgactctggctaacaaagaccagaatcagactgggaggaccaagctggacaaggagaga
ctcaagtcctgcatgagggaactggagagcataggtcagcaggctaagaccatcaggacg
caggtgaagaagaacacagtgagagataagatcaagctggttcagaacttcctccagaag
ctcaggttcctcgctgatgagccgcagcacagcatcccggacgtctacatctggatgatg
agtaacaacaagcgtattgcctacgcccgtgtcccctccaaagacatcctgtactccggg
gtggacgaggagaccgggaaggactgtggcaaagtcaaaaccatcttcttcaagctgcct
ggtaagaagggctttggggcagctggctggacagtgcaggctaagacagagatctacctg
tggctgggtctgaaccgtcagaggaaggacttcctgtctgggctgcccaacggcttcgag
gagaacaagatgctgaaaggacctggctcgcagtctgctccccccatcagcctcacatac
acgatgaagcagatcttccagctgagggtccatatgtaccaggctcgcagcctgtttgca
gcagacagcagcggcctctcagaccccttcgccagggtcttcttctccacacacagccag
gtcacagaggtgctgaatgagacactgtgccccacctgggaccagctgatggtgtatgac
aacgtagaactgttcggagaagtcggagaactgagggacgacccgcctatcatcgtcata
gaaatctatgaccaggacacggtgggcaaagcagagttcatgggcaggaccttcgccaag
cctataaccaagatggcggatgaacactatggacatccacgtttccctccccaactagag
tactaccagatctatagggggaactgcgccgctggagagatgctggcggccttcgaactg
ctgcagattggtcctcatggtaaagctgacctgccgcccatcgacggtcccacagacatg
gaccgtggtcctatcctacctgtccctctgggcatcagaccagtcctcagcaagtacagg
atcgaggtgctgttctggggcctgagggacctgaagagggtcaacctagtcgcggtggac
aggcctcgtgtggacatagaatgtgccggtaaaggagtccagtcttccctcatccagaac
tacaagaaaaatcccaacttcggcactctggttaagatgtttgaggtggatctgcctgag
aacgagctgcttcaccctcccctgaacatcagggtggtggactgcagagctttcggtcgt
tacaccctggtggggaaccatgctgtcaccaccctacgcaagttcatttaccgggcagca
gacaagcacgccaacaacttgaacactcaagaggagatcattgtcaactatgagccagag
cccaccatcaagaagatggagaccatggtcaagctggactctgggtctgatgctgtggtt
aaaatcgaggaggatgagaaaggagggaagaagaagaaaaggaagaagggaggagatgag
gtggaggaggaggagtttgatgaaagcatgttggattggtggtccaagtactttgcctcg
atcgaaactctgatggagattctcaaggctcaggaggcagctatggcggatgctgaggag
aaagaggaccaggatattgctgctgagggcggagagatcaaacctgatgactctcttgtc
aaaggaaagagaggcaagggaaaaaaggagaagaagagggctgggcctggagacatacca
gagaagaaaaagcacaacattaatgagctacaggtgtaccccaaggagctggagaatgag
tttgataactttgaagattggcttcacaccttcaacctgttcagagggaaggccggagac
gacgacgaccagaacatggcggatgaagaaaggattattggcaaattcaaaggttctctg
tgcatgtacaaagtgccggtgtcagatgagatgcagcgggagatgggctttgactccaac
atgggcatgttccagaacattccaactaatgacccaatcaacgtcctagtccgggtctat
atcatcagggctactgacctgcacccagcggatatcaatggaaaagcagatccatacatt
gctatcaaactgggcaagtccgatatcaaagacaaagataactacatctccaaacaactc
aaccctatctttggcaaatcctttgacatcgaggccacatttcccatcgactccacacta
acagtgtccgtctatgactgggatttagtgggcactgacgacctgattggggagactaaa
ctggatctggagaaccgctactacagcaaacacagagcaatatgtggcatcccatctaaa
tatgccatccatggctacaacgtgtggcgggaccccctgaagccgacccaaatcctggcc
aagctgtgtaaggagggtaagctggacgggccccactacggccctggaggacgggtcaag
gtggccaaccgggtcttcgtgggcccaactgagatcgaagatgaaaatggtctgaagaag
cagacggatgagcacctggccctgacagtgctgaagcactgggaggacatccccagggtg
ggctgtaaactgattccagaacatgtggagaccaggccactcctcaatcttgacaagcct
gggatcgaacaggggaggattgagatgtgggtggacatgttccccaaggatatgcctgca
cctggacctgccattgatatttcacccaggaaaccaaagaagtttgaactgagggtgatc
atctggaacacagacgaggtcattctggaggatgatgacatcttcactggagaaaagtcc
agtgatatcttcgtgcgaggctggctgaaaggtcagcaggaggacaagcaggacacagac
gtccactaccactccctgacaggggagggtctcttcaactggcgcttcatctaccccttt
gactacttgcaggccgaggagaagatcgtcatctctaagaaggagtccatgttcgcctgg
gacgagactgagtataagatccctgctcgtctcaacttacaagtctgggatgctgatcac
ttctctgcagatgattttttaggcgccattgagctagacctgaaccgtttccctcgtgga
gcgaagacagccaagcagtgttccatcaacatggtgctgaatgaaaaggatattcccatg
gtgtccatcttcaaacagatgaggatcaagggctggtggcccttcctggccagagatgag
aacgacgagtttgaactcacggggaaagtggaagccgagctgcagctgatgactgcagag
gaggctgagaagaacccagtgggggaaggacgcaatgaacctgagcccctggagaaaccc
aaccgtccagacacagccttcctatggttcctcatgcctttcaaagccatcaaaaaccta
atctgcaaccagtacttctggctcacgatcaagttagtggtggccctgctgctggtgctc
gtcctgggcctcttcatctacagcatgcctggatacatggccaagaaactaatgggtgtc
tga
DBGET
integrated database retrieval system
