Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374243
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Entry
139374243 CDS
T10872
Name
(RefSeq) guanine nucleotide exchange factor C9orf72-like isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139374243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139374243
Membrane trafficking [BR:
ocla04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
139374243
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
139374243
NCBI-ProteinID:
XP_070971370
LinkDB
All DBs
Position
19:38173563..38180303
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AA seq
463 aa
AA seq
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MSSGPPQSPTVAKTEVTVEGECPIFAATFAYWDNILGPRVCHIWAPRCEQPLLLSDGEVT
FLANHTLNGEILRSTECGAVDVKFFVLAEKGVIIISLIFDGELKGDKNTCALSIILPQTE
LAFYLPLHMVCVDRLKHIIRKGRIWMQKGYNIISVLSSEIVPIMELLSSMKTHSVPEDID
IKDTILNDDDIGDGYHEDFLHKAVSSHLQTCGCSMVVGSNPDKVNKVVLTLCLFLTPAER
KCSRFCKADSTFKYDTGLFVQGLLKDSMGSFVLPFRQVLYSPYPTTHIDVDINTVKQMPP
CHEHTHIQRRYMRSELSALWKAASEEDIAPDTDTGIHTDESFTPDLNVFQDVMHKDTLVK
SFIDEVFMLKPGLNLRSTYLAQFLLILHRKALTLLKYIEDETQKGKKPFRSLRSLKTDLD
LMVEGDLNIIMALAEKQRAGLHSFVFGKQFYTSVQERDVLMSF
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaggcccacctcagtcgcccacagtggctaagacagaggtgactgttgaagga
gaatgccctatcttcgctgccacctttgcctactgggacaacattctgggcccgcgggtg
tgtcacatctgggctcccaggtgcgagcaaccactgttgctgagcgatggcgaagtcacc
ttcctggccaatcacacgctgaacggggagattctgcgcagcacagagtgcggcgccgtg
gacgtcaaattcttcgtcctagctgagaagggtgtcatcatcatctcgctcatcttcgac
ggcgagctgaagggtgacaagaacacctgtgccctgtccatcatcctgccgcagacagag
ctggccttctacctgcccttgcacatggtctgtgtggatcggctcaaacacataatccgc
aagggacgcatctggatgcaaaagggctacaacataatttctgtgctgtcatcagagatt
gtccccatcatggagctgctgtcatccatgaagacacacagtgtcccagaggacatagac
atcaaggacaccatcctaaatgacgatgacatcggagacggctatcatgaagatttcctg
cacaaggcagtcagttctcatctccaaacttgtggctgctccatggtggtcggaagcaac
ccagacaaagtcaacaaggtagtgctcacgctgtgcctcttcctcacccctgctgagagg
aagtgctctcggttctgtaaagctgactctactttcaagtatgacacaggactgtttgta
caaggcctcctcaaggactccatgggcagttttgtcttgcccttccgccaggtgctgtac
tcaccctacccgaccacgcacatcgacgtggacatcaacacggtgaagcagatgccgccc
tgccatgagcacacacacattcagcggcgctacatgcgctcagagctcagcgcgctctgg
aaggcggccagcgaagaggacatcgcccccgacactgacaccggcatccacaccgacgag
tccttcacccccgacctaaatgtttttcaggacgttatgcataaagacaccctggtaaag
tcatttatagatgaggtgttcatgctgaagccaggtctcaatctgcgaagtacttacttg
gcccagttcttgctgatccttcacaggaaggcactcacactactcaaatacattgaagat
gagacgcaaaagggaaagaagcctttccgatccttgcgcagcttgaagaccgacctcgac
ctgatggtggaaggcgacctgaatatcatcatggcattggctgaaaagcaaagggctgga
ctgcactcctttgtatttgggaagcaattctacaccagtgtacaggagcgagatgtgctc
atgagcttttga
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