KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374864
Entry
139374864         CDS       T10872                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    139374864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocla03000]
    139374864
   04121 Ubiquitin system [BR:ocla04121]
    139374864
   03036 Chromosome and associated proteins [BR:ocla03036]
    139374864
Enzymes [BR:ocla01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     139374864
Transcription factors [BR:ocla03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    139374864
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     139374864
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    139374864
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     139374864
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like JmjC F-box Cupin_8 LRR_4 Roughex
Other DBs
NCBI-GeneID: 139374864
NCBI-ProteinID: XP_070972137
LinkDB
Position
19:complement(16725023..16744424)
AA seq 1411 aa
MGGFAVATQDRSSYPENVSQQCKAPGVKTQQKPGSRLRRLARSTVLEQFYSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPTSVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPDFQKHSLGIGLTRDPSTCESVNGHTQKE
DEEEAPPTRGSKPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHDIRA
LLKEHANDIPKLSYTGKPIVKWPTRPSWYQPPPPPPPVARPKLSATVVTPRPQKPASSMS
VLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVVCEL
CGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGEGVVNTDLPSCWECPKCVLGITD
TESSGIDDDDDSGASVGLGAGASTLSPAALSSSQGPLGVSMEPFSAPGLGDEGWGRALLL
HPGLVPNHPPSSSSWSSEAPLPSPGQLLPQQRGLKRAGRWASGRRKRVKGDKNKMLHAKR
KSSSYLDGRIAKIYRRGGHSDDSGSDDDDDDDEEDDDDDEGSRGGGGGAGRKMSGPRPRG
SGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRRGRGGLGVGRGDRERGGRVR
LRGGTRMQRRRDESEEDDNDDDDDDDDEDDDSEEDPQHHHRHKDHRQRRRRRRTDDEEDD
DEDDEEDSSARDLEGEDEDVDDEDEDEEDDENQSDSEPEPPVLLVSDLNDDFLNGSYLTV
TLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYVQHKTLGKTRHKNGTVAAGNGLAQPA
KNPVGRPPRHRINNLHGDTADRERDTASPSSSDSSASPTPPPHSSHSPSSLLSLPSFKDV
GNEKGGEKEVWVAVFLYLSRAELASCMTVCKAWYKWSCDKRLWSGVDVSRCPSLSSQALQ
GIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAGCSWSSMSALSTPSLPCLRTLD
LRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLDISDSTLRLILRHMPLLERLDL
AHCGDLTDQSVCLLTAAGTHTRNTLTEINLSGCNKLTDGCLAYLKRASGLALLDLRGCKG
VTRRGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq 4236 nt   +upstreamnt  +downstreamnt
atgggcggctttgctgtagcaacccaagacagaagtagctacccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagccaggaagcagactacgcagactg
gcccggtcgaccgtccttgaacagttctactcaatcatggtgcggtcgggcacgaggcgg
cgctaccatgacgatggtatctcggacgacgagatcgaggggaagaggacctttgacctg
gaggagaagttgaggagcgaaaggttcacctcagacagggtgaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaag
ccagacggactgggtatcaagatgccagatccagacttcagtgtgaacgacgtcaagata
tttgttggcagcaggcgtatgatcgacgtgatggatgtgagcactcagaagggtatagag
atgtctatggcccagtggcgacgttactacgagacgcccccctcccaaagggacaaactc
tacaacgtcatcagcctggagtttagccacaccaaactggagaacctggtccagaggcct
acatcggtggacatcatagactgggtggacaacatgtggcctcggcacctgaaggagaga
cagagagactccaccaactccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgtgcagggctgctacacggacttccacattgacttcggaggttcctcggtc
tggtaccacatactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctataccttcatgatcccttca
ggttggatccatgcggtctacactccagtggacaccctggtgtttggggggaactttctc
cacagcttcaacatccccatgcaactcaacatctacagcattgaggacaggacacgggta
ccagctaagttccgttatccgttctactatgagatgtgttggtacgtgttggagagatac
ctcttcagtctgaccaacacctcctacctcacgcctgacttccagaaacactccctgggc
atcggtcttacgagagacccctccacctgtgagtcagtcaacggccacacccagaaggag
gatgaagaggaggctcccccgacgcggggctctaagcccggggtgaaggttcacctgacg
ccctttgagctggaggggctgtggaacctgctggggaagctggagtcgctgccctcacag
aagaactgtgtcccggcgggcatacacaatgctcccgcgctgctgcacgacatcagggcc
ctgctgaaggagcatgctaatgacatccccaaactgtcctacactgggaagcccatcgtc
aagtggcccactaggccatcgtggtaccagcctcctccccctcctcccccggtggctcgt
cccaagctgtctgccacggtggtgaccccgcgaccccagaagcccgcctcctccatgtcc
gtgctgcggcggcggcgcgtgcggtgtaagcgctgcgaggcgtgcgtcaggacggagtgc
ggggattgtaacttctgcagggacatgaagaagttcggcgggccggggaaactcaaacag
acctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtgtgtgagctc
tgtggagaggggaaccaggagggaggagaggggccagtcttcgccctcaccctcatggag
tgttccaactgtgcccagatagcccaccccgcctgcctcaaggtaacaggggagggtgtg
gtgaacacagatctgcccagctgctgggagtgtccaaaatgtgttctaggaatcaccgat
actgagtcttcgggtatcgatgatgatgacgacagcggggcgtccgttggcctcggcgct
ggcgcaagcaccctctcccccgccgccctctcctcctcccaggggcctttaggcgtctcc
atggagccattctctgctcctgggttgggggacgagggctggggcagggcgttactgcta
cacccagggctggttcccaaccaccccccctcctcctcctcctggtcctcagaggcgccc
cttccctcccctggtcagctactaccacagcagcgcggcctcaagcgggcggggagatgg
gcaagcgggcgcaggaagagggtgaaaggggacaagaataaaatgttacacgcgaaacgc
aagtcttcttcgtatctcgacggccgcatagctaagatctaccgtcgcggtggtcacagc
gatgactcgggcagcgatgatgatgacgacgatgatgaggaggatgatgatgatgatgaa
ggctccaggggcggaggaggcggcgcgggaaggaagatgtctggaccacgccctcgcggc
agtggctccgcctctcgaagaggctacgggactgggaggcgaggcatttggagaggctcc
tcccatagaggggcaggccgtgggagtgggctggcccctcactcctccctgaagatgagg
cgtggcagaggggggctgggggtggggcgaggggacagggagagaggcgggagagtgcgc
ctccggggaggcaccaggatgcagagacgcagggacgagtcagaggaggacgacaacgat
gatgatgatgatgatgacgatgaagatgacgacagcgaggaagatccgcagcatcaccac
cggcataaagaccaccggcaacgccgcaggcggaggagaacggacgacgaagaagacgac
gatgaagacgatgaggaagacagctcagcccgggacctggagggggaggatgaggatgtg
gacgatgaagacgaggatgaggaagatgacgagaaccagtcagactccgaaccagagcct
cctgttctcctagtgtctgaccttaacgacgacttcctaaatggctcgtacctgaccgtg
accctacagcgccccccaagggctaaacgccaccccggctccatcgtacccaagctggag
gccgccatgtctcccagaacccacggcggcggtccaggttacgtccaacataaaaccctc
gggaagacgcggcacaaaaacggcacggtcgccgccggcaatggcctggcccagcccgcc
aagaatccagtcggccggccgcctcgtcaccgtatcaacaatcttcacggcgacacagca
gacagggagagggacactgcctctccttcctcctcagactcctcggcctcccccacccct
cctccccactcctcccactctccttcctcgctcttgtcgctgccctccttcaaggatgta
ggaaatgagaaaggaggggagaaggaggtgtgggtggcggtgttcctttacctgagcaga
gccgagctggctagctgtatgactgtctgtaaggcctggtacaaatggagttgtgacaag
cgtctgtggagtggtgtggatgtatcgcgttgtccctcgctctcctcccaggccctgcag
ggcatcatcaaacgccagcccacctccctggacctctcctggacccccgtgtccaagaaa
cagatcaccctgctcatacaccgcctgccaggtctgaaggagttgatgatagcaggttgc
tcctggtcgtccatgtcagccctgtccacccccagcctgccgtgcctccgtaccctggac
ctgcgctgggcagagggggtcaaagacacccagatcagggacctggtcacaccaccaggt
tgtgacagtcggtctcggctgcgtggctgtgtggtgctgcgtctagccggcctggatatc
agtgactccaccctgaggctgattctccgtcacatgcccctgctagagcggctggacctg
gctcactgcggagacctcacggaccagtccgtctgcctgctcaccgccgccggcacacac
acgcgtaacacactcacggagatcaacctctcaggctgtaacaagctgacggacggctgt
ctggcgtacctgaagagggcgtctggcctggcgctgctggacctgcggggctgcaaaggt
gtgacgcggcggggctgtgagggcttcatctcggacctctctcactgcgtcctgttctgt
atgacggaggagaaactcatccagaggatatcgtaa

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