Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379363
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Entry
139379363 CDS
T10872
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139379363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139379363
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
139379363
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Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
ORF29
Motif
Other DBs
NCBI-GeneID:
139379363
NCBI-ProteinID:
XP_070978272
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Position
21:21455238..21465848
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AA seq
520 aa
AA seq
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MMSAQPRRIRLKPWLLAQVNSGRYPGLQWLSPDHRIFQIPWRHATRHLPTSEEENTIFKA
WALETGKYQGGLDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVQPYKIYEVCDQPCN
GDTVDEDEEEMPNIVGLSIDPRISDPHSFQTFPTAHRIDFPFSAALNDRYGTPHHTPMYS
NPNGSITMAAHLPQPTMAPPEFSADVPLVVKLEHGVFVHPGPVGPSNSLGMGGGSMQPHV
VTEMSPMVPSAASVAPVAPNPGADPMEAMSGVQNQEEEQAVPPYKYDLLNSLPLTDLDMK
FQYRGRKMGSLTVSNHQGCRLYYGHLEPTPEQVDLFGPVTLNQVLFPGSADIQNEKQRFY
TEHLLDVMDRGLILEIWEQDIYAIRLCQCKVYWSGPGVDEQGPPNPMERERKYKVFSLNN
FLHGLILFQKGETPTPPPFELYFCFGEDWPDQRKPKEKKLIVVQVVPVVARILTEMFSGD
LSWSTDSIRLQISNPDLKDQTVEQFKELQRLLQSQHGLGS
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgcgcagcctcggaggatccgcctaaagccttggctgttagcccaggtgaac
agcgggaggtaccccggcctgcagtggctcagcccggaccaccggatcttccagatcccc
tggaggcacgccacaagacacctgcccacctctgaggaagagaacaccatcttcaaggcc
tgggctctggagacggggaagtaccaggggggtctggatgagcctgaccctgccaagtgg
aaggccaacctgcgctgtgccctcaacaagagccgggagttcaaactgaaatacgacggc
accaaggagacacctgtccagccctacaagatctatgaggtctgtgaccagccctgcaat
ggagacacagttgatgaagatgaggaggagatgccgaatattgttggtctctccattgac
cccagaattagtgacccacacagttttcagacattccctactgcacataggatagacttt
cccttcagcgccgctctcaatgacagatatggcaccccccaccacacccctatgtactcc
aatcccaacgggagcattaccatggcagcgcatctccctcagccaaccatggctcccccg
gagttttctgccgacgttccattggtggtgaagttggaacatggggtctttgtgcaccct
ggacccgtaggaccctccaacagcctggggatgggtggagggagcatgcagcctcatgtg
gtcactgagatgtcccccatggttccttctgctgcatctgtggctccggttgcccctaac
ccaggtgccgaccccatggaggccatgtccggagtccagaaccaggaagaagagcaggcg
gtgccaccctacaaatatgacctgctgaacagcctgccattgactgacctagacatgaag
ttccagtaccggggtcgcaagatgggctccctgacggtgagtaaccaccaaggctgccgg
ctgtactacggccacctggagcccaccccggagcaggtggacctgttcggccctgtcacc
ctcaaccaagtgctcttccctggctcggccgacatccagaacgagaagcagcggttctac
acagagcacctgctggatgtgatggaccgaggcctgatcctggagatctgggagcaggat
atatacgctatcaggttgtgtcagtgcaaggtgtattggtctgggccgggcgttgacgag
caggggccacccaaccctatggagagggagaggaagtacaaagtgttcagcctcaataac
ttcctgcacgggctcatcttgttccagaagggtgaaactcccaccccaccaccgtttgag
ctctacttctgctttggggaggactggccagatcaacggaaacccaaggagaagaagctc
atcgttgtgcaggtggtccccgtggtggcgcggatcctaacagagatgttttccggagac
ctgtcctggtccacagacagcatccggctgcagatctccaacccagacctgaaggatcag
acggtggaacagttcaaggaactccagaggcttctccagagtcagcatggcctgggatcc
tga
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