Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382398
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Entry
139382398 CDS
T10872
Name
(RefSeq) major histocompatibility complex class I-related gene protein-like isoform X1
KO
K06751
MHC class I antigen
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
ocla04145
Phagosome
ocla04218
Cellular senescence
ocla04514
Cell adhesion molecules
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139382398
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139382398
04145 Phagosome
139382398
09143 Cell growth and death
04218 Cellular senescence
139382398
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139382398
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139382398
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
139382398
Exosome [BR:
ocla04147
]
Exosomal proteins
Proteins found in most exosomes
139382398
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
ocla00537
]
Antigens
139382398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MHC_I
C1-set
C2-set_3
Ig_3
DUF4224
MHC_I_3
BARF1_ig2
Motif
Other DBs
NCBI-GeneID:
139382398
NCBI-ProteinID:
XP_070982509
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All DBs
Position
24:31479249..31485823
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AA seq
329 aa
AA seq
DB search
MITTILISFMQFSIVAPHSLHRHCIATQGTLYPKNIQLVMIDDVIVYYYNSSAEQEAVVP
EWLNHPEGIEFWQEVHRNLKFNRYVMDTAVRVTSEHYNHSHDHFYQAHGRCGWKSDGTTE
AFMSHAYDGKDFVSFDVSTRTWTAAVSHAVFYKRKRETDLEDLVRLVIHYESGCIRWLEK
LLEFSVTVREPKVPAVSLFERPPHGNSEVEVTCHVTGFYPRAVQVEWLGAEGLPMVDGVN
SGEVLPNGDGSYQLRKSLTVPQEAQDTQSYSCLVLHSSIAGNITVTWAPKKNLANVLMAI
VIIASVVLILTVLFKYLVWRRAVAQNPRG
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgataaccacaattttaatttcattcatgcagttttccatcgtagcccctcattctctt
catcgtcattgcatcgcaacccaagggaccttgtatccgaaaaatatccagttggtaatg
atagatgatgtcattgtctattactacaacagcagtgctgaacaagaggccgtagtgcca
gaatggttgaaccaccctgagggaattgaattttggcaggaggttcatcgaaatctgaaa
tttaatcgatatgtaatggatactgctgtgagagtaacaagtgaacattacaatcattca
catgatcacttttaccaagctcatggacgctgtggatggaagtcagacggaaccacagag
gcctttatgagccatgcatatgacggcaaagactttgtcagcttcgatgtatcgaccaga
acatggacagctgcagtttcccatgctgttttttacaaaagaaaaagggaaacagattta
gaagatcttgttaggctggtcattcattacgaatctggatgcatccgttggctggagaaa
ctgttagagtttagcgttacagttcgagaacccaaagtccctgcggtgagtctgtttgag
agaccgcctcatggcaactccgaggtggaggtcacatgtcatgtgacagggttctaccct
cgggcggtgcaggtggagtggttgggggcagaggggcttcccatggtagacggggtgaac
agtggggaggtgctgcccaacggagacggttcataccagctaaggaagagcctgactgtc
ccacaggaagcccaggacacccagagctacagctgcctggtgctccacagcagtatagct
gggaacatcacagtaacctgggctccaaagaagaacctggccaatgtgctcatggctata
gtcatcattgcatctgtagtcttgatactcactgtcctattcaagtatttagtatggagg
agagcagtagcacaaaacccaagaggatga
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