Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384062
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Entry
139384062 CDS
T10872
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04115
p53 signaling pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04350
TGF-beta signaling pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139384062
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139384062
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139384062
04148 Efferocytosis
139384062
09143 Cell growth and death
04115 p53 signaling pathway
139384062
09144 Cellular community - eukaryotes
04510 Focal adhesion
139384062
09142 Cell motility
04820 Cytoskeleton in muscle cells
139384062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139384062
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139384062
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139384062
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139384062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
cEGF
TSP1_CCN
EGF
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139384062
NCBI-ProteinID:
XP_070984800
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All DBs
Position
25:18474785..18488121
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AA seq
1172 aa
AA seq
DB search
MKLTGVFLLLVLWNCEGSRVAESRDDNSVYDLFELVKVNKRHQGVTLVKGADPYSPAYKI
LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSLLTVERDDGSGPLFEIIS
NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMDV
PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQSSATLTDV
MTLDNPVNGSSPAIRTDYTGHKTKDIQQVCGFSCEDITSMFKELKGLGVIVKQLSNELNR
VNKESTLLMNQMNIHSGVCLHNGIVHKDKDEWTVDDCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGNPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG
RETEVCQESPCPINGGWGPWSLWDTCSVTCGGGLQTRQRLCNNPAPKYNGKECQGDTKTS
QLCGKEDCPINGCLSNPCFAGAKCTSFDDGSWKCGSCPVGYTGNGINCKDIDECKEVPDA
CFTLNAVHRCENTEPGYNCLACPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGTHDCN
KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDTDDVGDRCDNCV
HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL
EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNMDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLVHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacaggagtttttctccttttggtgctttggaattgtgagggcagcagggtg
gcagagagtagagatgataacagtgtatacgacctattcgagcttgtgaaagtgaacaaa
aggcaccaaggtgttaccttggtaaaaggcgcagatccttacagcccagcctataagatc
ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattcg
atacaagctgagaggggattccttctcctggtcaacttcaagcagttcaaaaaaaccagg
ggcagtcttttgactgtggagagggatgacggatcaggaccgttattcgaaattatttct
aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg
tccatagaagatgcggatctagcgactggacactggaagaatatcacgctgttcattcag
gaggatcgtgcccagctgttcgtcgggtgtgaagagatcaatatatcagaaatggacgtg
cccatccaaaaggtcctgacgcatgaggttgccgacattgcccgtctgaggatcggaaaa
ggagctgtgaaagatagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc
actttggaggcgattttacgcaataagggatgccaaagctctgcaactttgactgatgtc
atgacactggacaacccagtaaatgggtccagcccagcaataaggactgattacactggc
cacaaaaccaaagatattcagcaggtctgtggtttttcctgtgaggatatcaccagcatg
ttcaaggagctcaaggggcttggtgtgattgttaagcagctgtcaaatgagctcaacaga
gtgaataaggagagcactctgctcatgaaccagatgaacatccacagtggggtctgtctt
cacaacggcattgtgcacaaggacaaagatgagtggactgtggacgactgcacagagtgt
acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc
aatgccaccgtgcctgatggagagtgctgcccacgttgtggaaacccgagtgactatgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggacggggt
atccagcagcgaggtcgctcctgcgaccgcatcaacagcaactgcgaaggcacttccgtg
cagacccgcgactgctaccctcaggaatgtgacaagcgctttaagcaggatggtggctgg
agccactggtctccctggtcttcctgctctgtgacctgtggtgagggagtcatcacccgc
atccgcctctgcaactcccccactccccagatgggaggcagagactgtcaaggacagggc
cgagagacagaggtctgccaggaatcaccttgtccaattaacggaggctggggaccctgg
tctctgtgggacacctgttctgtcacctgtggaggaggactccagactcgccagcgtctc
tgtaacaaccctgcccccaagtacaatgggaaggaatgtcagggtgacaccaaaacatcc
caattgtgtggcaaagaggactgccctattaatggctgtctgtccaacccgtgctttgct
ggagctaagtgtaccagctttgatgatggttcctggaaatgtggctcatgcccagtgggc
tacaccggaaacggcatcaactgcaaggacatcgacgagtgcaaggaggtccctgatgca
tgcttcacactcaatgcagtccaccgctgtgagaacactgagcctggctacaactgcctt
gcctgcccccctcgctactcaggaccacagcccttcgggaggggagtggagcaggccaca
gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcacccatgattgcaac
aagaatgctaactgtatctacctgggtcagttcagcgacaccatgttccgctgtgagtgc
aaacctggttacgctggcaatggccacatctgtggagatgacaccgacctggatggatgg
cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaagacaactgt
ccaaaccttcccaactctgggcaggaggaccatgacaaagatgggcttggtgacgcttgc
gatcacgatgatgacaatgatgggatccctgatgatagggacaactgcccaatggtctac
aaccccgctcagtatgatgtggacacagatgacgttggtgatcgctgtgataactgtgtg
catgagagcaaccctgaccaagtcgacacagacaacaacggagagggagatgcctgtgct
attgacattgacggtgatggtattctaaatgagagggacaactgcccctatgtctacaat
gtggaccagagagacactgacggggacggagtgggagaccactgcgacaactgccctctt
gagcacaacccagaccagattgactctgactcagatcgtgtgggtgacaagtgcgacaac
aaccaggacattgatgaggacggtcatcagaacaacatggacaactgtccctatatcccc
aacgccaaccaggccgaccacgacaaagatggcaagggtgacgcctgcgaccacgatgac
gacaacgacggtatccctgacgacaaggacaactgcaggctggcctttaaccctgaccag
ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagataac
atacttgatatctacgatgtgtgccctgagaactttgccatcagcgagacggacttccgc
aggttccagatggtaccactggaccccaagggcacctcccagatagaccccaactgggtg
gtccgccaccagggcaaagagctggtgcagactgtcaactgtgaccctggcatcgctgtt
gggttcgatgagtttaacgcagtggacttcagtggaacgttcttcatcaacacagacagg
gatgatgactacgctggctttgtgtttggctaccagtccagctccaggttctatgtggtg
atgtggaagcagatcacacagacctactggtcccacaccccgaccagagctcagggctac
tctggagtgtccatcaaagtagtcaactccaccacaggacctggggagcatctgaggaac
gccctttggcacaccggtgacactgctggacaggtacgtactctgtggcacgaccccaag
aacattggctggaaagactacactgcctacagatggcacctggtccacaggcccaagtct
ggactcatcagagttgtgatgtatgaaggcaagagaatcatggcggattctggaaatatc
tacgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca
tacttctcagacctcaaatacgaatgcagagattcataa
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