Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139384062
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Entry
139384062 CDS
T10872
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04115
p53 signaling pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04350
TGF-beta signaling pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139384062
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139384062
04518 Integrin signaling
139384062
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139384062
04148 Efferocytosis
139384062
09143 Cell growth and death
04115 p53 signaling pathway
139384062
09144 Cellular community - eukaryotes
04510 Focal adhesion
139384062
09142 Cell motility
04820 Cytoskeleton in muscle cells
139384062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139384062
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139384062
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Opsonins
139384062
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139384062
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
cEGF
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139384062
NCBI-ProteinID:
XP_070984800
LinkDB
All DBs
Position
25:18474785..18488121
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AA seq
1172 aa
AA seq
DB search
MKLTGVFLLLVLWNCEGSRVAESRDDNSVYDLFELVKVNKRHQGVTLVKGADPYSPAYKI
LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSLLTVERDDGSGPLFEIIS
NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMDV
PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQSSATLTDV
MTLDNPVNGSSPAIRTDYTGHKTKDIQQVCGFSCEDITSMFKELKGLGVIVKQLSNELNR
VNKESTLLMNQMNIHSGVCLHNGIVHKDKDEWTVDDCTECTCQNSATVCRKISCPLMPCA
NATVPDGECCPRCGNPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG
RETEVCQESPCPINGGWGPWSLWDTCSVTCGGGLQTRQRLCNNPAPKYNGKECQGDTKTS
QLCGKEDCPINGCLSNPCFAGAKCTSFDDGSWKCGSCPVGYTGNGINCKDIDECKEVPDA
CFTLNAVHRCENTEPGYNCLACPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGTHDCN
KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDTDDVGDRCDNCV
HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL
EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNMDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNILDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN
ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLVHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacaggagtttttctccttttggtgctttggaattgtgagggcagcagggtg
gcagagagtagagatgataacagtgtatacgacctattcgagcttgtgaaagtgaacaaa
aggcaccaaggtgttaccttggtaaaaggcgcagatccttacagcccagcctataagatc
ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattcg
atacaagctgagaggggattccttctcctggtcaacttcaagcagttcaaaaaaaccagg
ggcagtcttttgactgtggagagggatgacggatcaggaccgttattcgaaattatttct
aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg
tccatagaagatgcggatctagcgactggacactggaagaatatcacgctgttcattcag
gaggatcgtgcccagctgttcgtcgggtgtgaagagatcaatatatcagaaatggacgtg
cccatccaaaaggtcctgacgcatgaggttgccgacattgcccgtctgaggatcggaaaa
ggagctgtgaaagatagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc
actttggaggcgattttacgcaataagggatgccaaagctctgcaactttgactgatgtc
atgacactggacaacccagtaaatgggtccagcccagcaataaggactgattacactggc
cacaaaaccaaagatattcagcaggtctgtggtttttcctgtgaggatatcaccagcatg
ttcaaggagctcaaggggcttggtgtgattgttaagcagctgtcaaatgagctcaacaga
gtgaataaggagagcactctgctcatgaaccagatgaacatccacagtggggtctgtctt
cacaacggcattgtgcacaaggacaaagatgagtggactgtggacgactgcacagagtgt
acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc
aatgccaccgtgcctgatggagagtgctgcccacgttgtggaaacccgagtgactatgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggacggggt
atccagcagcgaggtcgctcctgcgaccgcatcaacagcaactgcgaaggcacttccgtg
cagacccgcgactgctaccctcaggaatgtgacaagcgctttaagcaggatggtggctgg
agccactggtctccctggtcttcctgctctgtgacctgtggtgagggagtcatcacccgc
atccgcctctgcaactcccccactccccagatgggaggcagagactgtcaaggacagggc
cgagagacagaggtctgccaggaatcaccttgtccaattaacggaggctggggaccctgg
tctctgtgggacacctgttctgtcacctgtggaggaggactccagactcgccagcgtctc
tgtaacaaccctgcccccaagtacaatgggaaggaatgtcagggtgacaccaaaacatcc
caattgtgtggcaaagaggactgccctattaatggctgtctgtccaacccgtgctttgct
ggagctaagtgtaccagctttgatgatggttcctggaaatgtggctcatgcccagtgggc
tacaccggaaacggcatcaactgcaaggacatcgacgagtgcaaggaggtccctgatgca
tgcttcacactcaatgcagtccaccgctgtgagaacactgagcctggctacaactgcctt
gcctgcccccctcgctactcaggaccacagcccttcgggaggggagtggagcaggccaca
gccaagaaacaggtgtgcacaccccgtaacccctgccaagacggcacccatgattgcaac
aagaatgctaactgtatctacctgggtcagttcagcgacaccatgttccgctgtgagtgc
aaacctggttacgctggcaatggccacatctgtggagatgacaccgacctggatggatgg
cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaagacaactgt
ccaaaccttcccaactctgggcaggaggaccatgacaaagatgggcttggtgacgcttgc
gatcacgatgatgacaatgatgggatccctgatgatagggacaactgcccaatggtctac
aaccccgctcagtatgatgtggacacagatgacgttggtgatcgctgtgataactgtgtg
catgagagcaaccctgaccaagtcgacacagacaacaacggagagggagatgcctgtgct
attgacattgacggtgatggtattctaaatgagagggacaactgcccctatgtctacaat
gtggaccagagagacactgacggggacggagtgggagaccactgcgacaactgccctctt
gagcacaacccagaccagattgactctgactcagatcgtgtgggtgacaagtgcgacaac
aaccaggacattgatgaggacggtcatcagaacaacatggacaactgtccctatatcccc
aacgccaaccaggccgaccacgacaaagatggcaagggtgacgcctgcgaccacgatgac
gacaacgacggtatccctgacgacaaggacaactgcaggctggcctttaaccctgaccag
ctggactctgatggtgatggtcgtggagatgtttgcaaagatgactttgaccaagataac
atacttgatatctacgatgtgtgccctgagaactttgccatcagcgagacggacttccgc
aggttccagatggtaccactggaccccaagggcacctcccagatagaccccaactgggtg
gtccgccaccagggcaaagagctggtgcagactgtcaactgtgaccctggcatcgctgtt
gggttcgatgagtttaacgcagtggacttcagtggaacgttcttcatcaacacagacagg
gatgatgactacgctggctttgtgtttggctaccagtccagctccaggttctatgtggtg
atgtggaagcagatcacacagacctactggtcccacaccccgaccagagctcagggctac
tctggagtgtccatcaaagtagtcaactccaccacaggacctggggagcatctgaggaac
gccctttggcacaccggtgacactgctggacaggtacgtactctgtggcacgaccccaag
aacattggctggaaagactacactgcctacagatggcacctggtccacaggcccaagtct
ggactcatcagagttgtgatgtatgaaggcaagagaatcatggcggattctggaaatatc
tacgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca
tacttctcagacctcaaatacgaatgcagagattcataa
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