Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139385241
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Entry
139385241 CDS
T10872
Name
(RefSeq) oxysterols receptor LXR-alpha-like isoform X1
KO
K08536
liver X receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03320
PPAR signaling pathway
ocla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139385241
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
139385241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139385241
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139385241
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139385241
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
139385241
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
139385241
NCBI-ProteinID:
XP_070986485
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Position
26:6814442..6847174
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AA seq
428 aa
AA seq
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MKHEGNLLPLEPPHHAGFSSPSQKGPSSLAEKSSPLLMEPSNIKADPAGDMLANTEGQPV
KRKKGPAPKMLGNEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEM
DMYMRRKCQQCRLRKCREAGMLEQCVLSEEQIRGKKMKKNEEETARTSAVVTPTPVPEVV
PLEPEQLEMIEKLVAMQKQCNKRSFIDRPKVTPWPQSQDPQNREVRQQRFAHFTELAIMS
VQEIVDFAKQLPGFLELTREDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKE
DFAKAGLQLEFINPIFEFSKGMNDLHLDEAEYALLIAINIFSAGQRSSDRPNVQDHELVE
RLQQPYVNALRSYIMIKRPNDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLL
SEIWDVHE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgagggcaacctcctccccctggaaccaccccaccatgcagggttttccagc
ccctcccagaaagggccttcctcactagctgagaagagcagcccgctgctcatggagccc
agcaacatcaaggccgaccccgccggcgacatgcttgccaacacagagggtcagccggtg
aagaggaagaagggtccagcccccaagatgctggggaacgaggtgtgcagcgtgtgcggg
gacaaggcctcgggcttccactacaacgtgctgagctgcgagggctgcaagggcttcttc
cgccgcagcgtcatcaagagcgcccagtactcgtgcaagaacaacggccgctgtgagatg
gacatgtacatgcgccgcaagtgccagcagtgccggctgcgcaagtgccgcgaggcgggc
atgctggagcaatgcgttctctcagaggagcagatccgagggaagaaaatgaagaagaac
gaggaagagactgcacgcacgtctgccgtggtgacccccaccccggtgccggaggtggtc
ccgctggagcctgagcagctggagatgatcgagaagctggtggccatgcagaagcagtgc
aacaagcgctcgttcatcgaccggcccaaagtcacgccgtggccccagagtcaggacccc
cagaacagggaggtacggcagcagcgctttgcccacttcaccgagctggccatcatgtcg
gtccaggagatagtggactttgccaagcagttgcctggcttcctagagctcaccagagag
gaccagattgcgctgctgaagacctcaaccattgagattatgctgctggaaacatcgcgg
agatataaccctgccattgagagcatcacgttcctgaaggacttcagttataacaaggag
gattttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttctccaag
ggaatgaatgacctgcatctggacgaggcggagtacgctctgctcatcgccatcaacatc
ttctctgcaggtcagaggtcaagtgaccggcccaatgtgcaggaccatgaactggtggag
cgactgcagcagccgtatgtgaacgcacttcgttcttacatcatgataaagagaccaaac
gatcatctgatgtttccacgcatgctcatgaagctggtcagcctccgcaccctcagcagc
gtccattctgagcaggtcttcgccctgcgcctccaggacaagaagctcccgccgctgcta
tctgaaatctgggacgtccacgagtga
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