Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139390622
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Entry
139390622 CDS
T10872
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
ocla04510
Focal adhesion
ocla04540
Gap junction
ocla04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139390622
04020 Calcium signaling pathway
139390622
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139390622
04540 Gap junction
139390622
09142 Cell motility
04810 Regulation of actin cytoskeleton
139390622
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ocla01001
]
139390622
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ocla04090
]
139390622
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
139390622
Protein kinases [BR:
ocla01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
139390622
CD molecules [BR:
ocla04090
]
Proteins
139390622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
Psg1
VEGFR-1-like_Ig-like
Haspin_kinase
DUF4715
Motif
Other DBs
NCBI-GeneID:
139390622
NCBI-ProteinID:
XP_070993970
LinkDB
All DBs
Position
31:complement(24832056..24877409)
Genome browser
AA seq
1094 aa
AA seq
DB search
MRSVRVSTLHLTALLTALLHFCPEYRCVEISPSNSEVVMTPGDSMIFTCSSWGTVGWRFK
RNDDIPYFGVENKNTTSVLILDNVTWRHTGVYVCAEALTDEAREVAVFVPDPEVWFIESS
HGMVTKTSEEGTIPCVVTNPHINVTLYETDSDMHLKGVYIPSEGYRASLEDRTYVCRGEL
NGEEKESQEFYVLSIVVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVFFSWDYPNRD
VDFIEPLTDILSSQSMRSCLAVSKATLANTGQYVCHVHESVQDQRATANVNITVLERGFV
ELRSVQERNVSAQLHQNVELRVEIESYPAPRVRWTKDNATVNGDNTVITRQEHETRYVSI
LTLVRIRTEQKGLYTVLVANGDDTKEVTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPSIQFFSCDSMLKCSNRSTVWQPLVSDPETLSIQTNISFNESRKVGQVRSQVTFHKP
QQVTVRCEASNEGGVRRRDVKLVSSTLFSQVAVLAAVLPLVVILITSIIILIAVWRKKPR
YEIRWKVIESVSLDGHEYIYVDPIHLPYDLAWEMARDSLVLGRTLGSGAFGRVVEATAYG
LSHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHRNKHTFLQYYAEKNQEDSGCRVSGGSTPLSQRKGYVSFGSEFDGGYM
DMSKDEPTVYVPMQELKDTIKYTDIQPSPYESPYQHHLYQEQDQTTVDSALVISDCPTLS
YSDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYVS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGAPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKYERRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
RDHPAVVRTKPRLSSHFPTPALTPSTAPATPQDTNPYPLTGDFRPEADGEEASYNDYIIP
IPDPKPEEEVCSEANDMPTKSLASSRALEDEEADSISQETVEADTIPEDKYLHANQALIP
LESSGTPEAEDSFL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtgtccactctccatctgacagccctactaacagctcttttgcac
ttctgccctgagtaccgttgcgtggagatctcccctagcaacagcgaggtcgtcatgaca
ccgggcgactccatgatcttcacctgttctagctgggggacagtcggatggaggttcaag
cggaatgacgacattccctattttggagtggagaacaagaacacaaccagtgttctcatt
ctggacaacgtgacgtggagacacacaggagtgtacgtctgtgccgaggctttgacggac
gaggctagagaggtggcagtctttgtgccggaccctgaagtgtggttcattgagagctcc
cacggcatggtgaccaagaccagcgaggaggggaccatcccctgtgtggtcaccaacccc
cacatcaacgtcaccctctacgagacggacagtgacatgcacctaaagggggtctacatc
cccagtgagggctacagggcatccctggaggacaggacctatgtgtgtcgtggggagctg
aacggagaggagaaagagtcccaggaattctacgtcttaagtatagttgtcccggagaca
atcgacgcctacatcaatgcgtctaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcacggagtggagctggtcttcttctcctgggactaccccaacagagac
gtggacttcatcgagccattgacagacatcctgtcgtcccagagcatgcgctcctgcctc
gccgtctctaaggcgacgctggccaacacagggcagtacgtgtgtcacgttcacgagagt
gtccaggaccagagggccaccgccaacgtcaacatcaccgtcctcgagcgaggcttcgtg
gagctgaggtctgtccaggagcgtaacgtctcggcccagctgcaccagaacgtagagctg
agggttgagatcgagtcctaccccgctccacgtgtccgctggaccaaagacaacgccacc
gtcaacggagacaacaccgtcatcaccaggcaggagcacgagaccaggtacgtcagcata
ttgaccttggtgaggatcaggacagaacagaagggactttacactgttctcgtcgccaac
ggagacgacaccaaggaagtgacatttgatctggaggtcaaagttccccctcagataaca
gacctgtcggaccaccacctcccagggaagaggcatgcagtgacctgtgtggccgagggg
gtcccctccccctccatacagtttttcagctgtgacagcatgctcaagtgcagtaaccgg
agcacagtgtggcagcccctggtgtcagaccctgagaccctgagtatccagaccaacatt
agtttcaatgagagccgtaaggtgggccaggtccgcagccaggtcaccttccacaagccc
caacaggtgaccgtccgctgtgaggccagcaacgagggaggagtccgcaggagagacgtc
aaactggtgtccagcactctgttctcccaggtggcagtgttggctgcggttctacccctg
gtggtcatcctcatcacctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tatgagattagatggaaggtgatagagtcagtgagtctggatggccatgagtacatctac
gtcgaccccatccacctgccctacgacctggcctgggagatggctcgagacagcctggtg
ctgggtcgtactcttgggtccggggcgtttggcagggtggtcgaggcgactgcctatggt
ctcagtcattcccagtccagcacaaaggtggcagtaaaaatgctcaaatccacagccagg
aggagtgagacccaggctctgatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacatcgtcaacctgctgggagcttgcaccaaacagggtcctctctacctggtgacg
gagtactgtcgctatggagacctggtggactacttacacaggaacaagcacacgtttctg
cagtactacgctgagaagaaccaggaggactctggttgccgcgtctctggagggagcacc
cctctcagccagaggaaaggctacgtgtcgtttggcagtgagtttgatggtggctacatg
gacatgagtaaggatgagcccacggtgtacgtccccatgcaggaacttaaagacaccatc
aaatacactgacatccaaccttctccatatgagtcgccctaccagcaccacctttaccag
gaacaagaccagaccacagtggacagtgccctggtcatcagtgactgccctaccctcagc
tattctgacctcattggcttcagctaccaggtggccaagggcatggagttccttgcctcc
aagaactgtgtccatcgtgatctggccgccaggaacgtgttgatctgtgaggggaagctg
gtgaagatctgtgactttggtctggccagagacatcatgcacgactccaactacgtctcc
aaaggcagcacgttccttcctcttaagtggatggccccagagagtattttccataacctg
tacaccaccctgagtgacgtgtggtcctatggcatcctgctctgggagatcttcaccctg
ggaggagccccctaccctgatctgcccatgaatgagctgttctacagtgccttaaagaga
ggatatcgcatggccaaacctaaccacgccaccgatgaagtttatgaagtcatgcagaag
tgctgggatgagaagtacgagagaaggccagagttctcttttctggtgcacacaatgggg
aacatgctcacagacagctataaaaagagatactgccaggtcaacgatgagttcttcaag
cgtgaccacccagccgtggtccgcaccaaacccaggctctcctctcacttccccactccg
gccctaaccccgtccaccgcccctgccaccccccaggacacaaacccctaccccctcact
ggggacttcagacccgaggcagatggtgaggaagcttcctacaacgactacatcatcccc
atcccagaccccaagcctgaggaggaagtctgctccgaggctaacgacatgccaacgaaa
agcctcgcaagttctcgggctctggaggacgaggaggctgattccatctcccaggagaca
gtggaggcagacaccattccagaggataaatatctccatgccaaccaggccctgattcca
ctggagtcctctggaacaccggaagcggaagacagcttcctgtga
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