Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393242
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Entry
139393242 CDS
T10872
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139393242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139393242
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
139393242
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
139393242
NCBI-ProteinID:
XP_070997816
LinkDB
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Position
33:complement(8678038..8687236)
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AA seq
533 aa
AA seq
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MMSVQPRRIRLKPWLLAQVNSGRYPGLQWLSPDHRIFQIPWRHATRHLPTSEEENTIFKA
WALETGKYQEGLDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVQPYKIYEVCDQPCN
GDTVDEDEEEEMPNIVDLSIDPRISDPRSYQAFPTSHGIDVPFSSPLNDRYGTSHHTPMY
PSPNMHSNPNGANTMAADLPQPTMAPPEFSSHVPLVVKLEHGVFVHHGPAEPSNGLGMGR
GSMQPPMVTEMATMVPSAASAAPVAPHPGAAPMEAMSGVQNQEEGQAVPPYKYDLLNSLP
LTDLDMKFQYRGRKMGSLTVSNPQGCRLYYGHLEPTPEQVDLFGPVNLNQVLFPGSADIQ
NEKQRFYTEHLLDVMDRGLILEIWEQDIYAIRLCQCKVYWSGPGVDEQGPPNPMERERKY
KVFSLNNFLHGLILFQKDETPTPPPFELCFCFGEDWPDQRKPKEKKLIVVQVVPVVARIL
TEMFSGDLSWSTDSIRLQISNPDLKDQTVEQFKELQRLLQSQHGLGPWATNGP
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgtgcagcctcggaggatccgcctgaagccctggctgttagcccaggtgaac
agcgggaggtaccccggcttgcagtggctcagcccggaccaccggatcttccagatcccc
tggaggcacgccacaagacacttgcccacctctgaggaagagaacaccatcttcaaggcc
tgggctctggagacagggaagtaccaggagggtctggatgagccggaccctgccaagtgg
aaggccaacctgcgctgtgccctcaacaagagccgggagttcaaactgaaatacgacggc
accaaggagacacccgtccagccctacaagatctacgaggtctgtgaccagccctgcaat
ggagacaccgttgatgaagatgaggaggaggagatgccgaatattgttgacctctccatt
gaccccagaattagtgacccacgcagttatcaggcattccctacctcacatgggatagac
gttcccttcagctcccccctcaatgacagatatggcacctcccaccacacccctatgtac
cccagtcccaacatgcactccaatcccaacggggccaataccatggcagcggatctccct
cagccaaccatggctcccccagagttttcttcccacgttccattggtggtgaagttggaa
catggggtctttgtgcaccatggacccgcagaaccctccaacggcctggggatgggtaga
gggagcatgcagcctcctatggtcactgagatggccaccatggttccttctgctgcatct
gcggctccggttgcccctcacccaggtgccgccccaatggaggccatgtccggagtccag
aaccaggaagaagggcaggcggtgccaccctacaaatatgacctgctgaacagcctgcca
ttgactgacctagacatgaaattccagtatcggggtcgcaagatgggctccctgacagtg
agtaacccccagggctgccggctgtactacggccacttggagcccaccccagagcaggtg
gacctgttcggccctgtcaacctcaaccaagttctattccctggctcggccgacatccag
aacgagaagcagcggttctacacagagcacctgctggatgtgatggaccgaggcctgatc
ctggagatctgggagcaggatatatacgctatcaggttgtgtcagtgcaaggtgtattgg
tctgggccgggcgttgacgagcaggggcctcccaaccctatggagagggagaggaagtac
aaagtgttcagcctcaataacttcctgcacgggctcatcttgttccagaaagatgaaact
cccaccccacccccgtttgagctctgcttctgcttcggggaggactggccagaccaacgg
aaacccaaggagaagaagctcatcgttgtgcaggtggtcccggtggtggcgcggatccta
acagagatgttttctggagatctgtcctggtccacagacagcatccgactgcagatctcc
aacccagacctgaaggaccagacggtggagcagttcaaggagctccagaggcttctccag
agtcagcacggcctgggtccctgggccaccaacggaccctga
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